A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.0
nTPM
Monaco:
282.3
nTPM
Schmiedel:
188.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.0
HPA sample
nTPM
Memory B-cell nTPM: 16.0
Samples: 6
Max nTPM: 31.1
Min nTPM: 2.8
P10809_1017
31.1
P10809_1025
14.9
P10809_1044
2.8
P10809_1063
12.6
P10809_1092
17.0
P10809_1105
17.4
Naive B-cell nTPM: 14.9
Samples: 6
Max nTPM: 21.9
Min nTPM: 0.3
P10809_1011
19.0
P10809_1029
16.5
P10809_1048
0.3
P10809_1067
13.8
P10809_1091
21.9
P10809_1104
17.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
282.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 98.2
Samples: 4
Max nTPM: 100.9
Min nTPM: 95.5
RHH5310_R3677
100.9
RHH5218_R3590
95.5
RHH5247_R3619
99.5
RHH5276_R3648
96.8
Naive B-cell nTPM: 104.5
Samples: 4
Max nTPM: 131.8
Min nTPM: 85.0
RHH5308_R3675
85.0
RHH5216_R3588
104.0
RHH5245_R3617
131.8
RHH5274_R3646
97.3
Non-switched memory B-cell nTPM: 87.4
Samples: 4
Max nTPM: 97.1
Min nTPM: 75.3
RHH5309_R3676
85.4
RHH5217_R3589
97.1
RHH5246_R3618
91.8
RHH5275_R3647
75.3
Plasmablast nTPM: 282.3
Samples: 4
Max nTPM: 292.7
Min nTPM: 273.5
RHH5312_R3679
287.9
RHH5220_R3592
292.7
RHH5249_R3621
275.2
RHH5278_R3650
273.5
Switched memory B-cell nTPM: 95.9
Samples: 4
Max nTPM: 117.7
Min nTPM: 87.4
RHH5311_R3678
87.9
RHH5219_R3591
90.8
RHH5248_R3620
117.7
RHH5277_R3649
87.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
188.7
Schmiedel sample id
TPM
Naive B-cell TPM: 188.7
Samples: 91
Max TPM: 249.9
Min TPM: 91.8
B_CELL_NAIVE_1
249.9
B_CELL_NAIVE_2
224.3
B_CELL_NAIVE_3
223.0
B_CELL_NAIVE_4
220.4
B_CELL_NAIVE_5
220.2
B_CELL_NAIVE_6
218.7
B_CELL_NAIVE_7
217.2
B_CELL_NAIVE_8
215.0
B_CELL_NAIVE_9
214.8
B_CELL_NAIVE_10
214.7
B_CELL_NAIVE_11
214.1
B_CELL_NAIVE_12
211.5
B_CELL_NAIVE_13
211.3
B_CELL_NAIVE_14
211.1
B_CELL_NAIVE_15
209.7
B_CELL_NAIVE_16
209.4
B_CELL_NAIVE_17
208.2
B_CELL_NAIVE_18
208.1
B_CELL_NAIVE_19
207.3
B_CELL_NAIVE_20
206.7
B_CELL_NAIVE_21
206.4
B_CELL_NAIVE_22
206.2
B_CELL_NAIVE_23
206.1
B_CELL_NAIVE_24
206.1
B_CELL_NAIVE_25
205.7
B_CELL_NAIVE_26
204.6
B_CELL_NAIVE_27
202.5
B_CELL_NAIVE_28
201.7
B_CELL_NAIVE_29
201.5
B_CELL_NAIVE_30
201.2
B_CELL_NAIVE_31
197.7
B_CELL_NAIVE_32
197.7
B_CELL_NAIVE_33
197.0
B_CELL_NAIVE_34
196.4
B_CELL_NAIVE_35
195.7
B_CELL_NAIVE_36
194.7
B_CELL_NAIVE_37
194.6
B_CELL_NAIVE_38
194.1
B_CELL_NAIVE_39
193.9
B_CELL_NAIVE_40
193.5
B_CELL_NAIVE_41
193.2
B_CELL_NAIVE_42
193.1
B_CELL_NAIVE_43
193.0
B_CELL_NAIVE_44
191.7
B_CELL_NAIVE_45
191.5
B_CELL_NAIVE_46
191.3
B_CELL_NAIVE_47
191.1
B_CELL_NAIVE_48
189.9
B_CELL_NAIVE_49
189.8
B_CELL_NAIVE_50
189.4
B_CELL_NAIVE_51
189.4
B_CELL_NAIVE_52
187.1
B_CELL_NAIVE_53
186.9
B_CELL_NAIVE_54
186.8
B_CELL_NAIVE_55
186.6
B_CELL_NAIVE_56
186.4
B_CELL_NAIVE_57
186.2
B_CELL_NAIVE_58
186.1
B_CELL_NAIVE_59
185.8
B_CELL_NAIVE_60
185.4
B_CELL_NAIVE_61
183.9
B_CELL_NAIVE_62
183.8
B_CELL_NAIVE_63
183.8
B_CELL_NAIVE_64
183.0
B_CELL_NAIVE_65
182.1
B_CELL_NAIVE_66
179.8
B_CELL_NAIVE_67
177.8
B_CELL_NAIVE_68
176.5
B_CELL_NAIVE_69
176.1
B_CELL_NAIVE_70
175.7
B_CELL_NAIVE_71
173.4
B_CELL_NAIVE_72
173.1
B_CELL_NAIVE_73
172.4
B_CELL_NAIVE_74
171.7
B_CELL_NAIVE_75
170.7
B_CELL_NAIVE_76
170.4
B_CELL_NAIVE_77
170.1
B_CELL_NAIVE_78
167.3
B_CELL_NAIVE_79
167.1
B_CELL_NAIVE_80
165.7
B_CELL_NAIVE_81
164.6
B_CELL_NAIVE_82
163.0
B_CELL_NAIVE_83
162.6
B_CELL_NAIVE_84
160.6
B_CELL_NAIVE_85
156.7
B_CELL_NAIVE_86
149.7
B_CELL_NAIVE_87
142.4
B_CELL_NAIVE_88
130.5
B_CELL_NAIVE_89
127.7
B_CELL_NAIVE_90
123.4
B_CELL_NAIVE_91
91.8
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