A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.4
nTPM
Monaco:
106.8
nTPM
Schmiedel:
176.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.4
HPA sample
nTPM
Classical monocyte nTPM: 19.4
Samples: 6
Max nTPM: 29.0
Min nTPM: 14.4
P10809_1003
29.0
P10809_1020
20.9
P10809_1039
15.1
P10809_1058
14.4
P10809_1080
19.5
P10809_1107
17.2
Intermediate monocyte nTPM: 23.4
Samples: 6
Max nTPM: 32.0
Min nTPM: 14.9
P10809_1004
32.0
P10809_1023
19.2
P10809_1042
26.2
P10809_1061
27.8
P10809_1081
20.5
P10809_1108
14.9
Non-classical monocyte nTPM: 22.3
Samples: 5
Max nTPM: 29.3
Min nTPM: 14.9
P10809_1005
25.1
P10809_1053
29.3
P10809_1072
27.1
P10809_1082
15.0
P10809_1109
14.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
106.8
Monaco sample
nTPM
Classical monocyte nTPM: 101.0
Samples: 4
Max nTPM: 115.1
Min nTPM: 86.9
RHH5313_R3680
101.2
RHH5221_R3593
100.7
RHH5250_R3622
115.1
RHH5279_R3651
86.9
Intermediate monocyte nTPM: 106.8
Samples: 4
Max nTPM: 133.0
Min nTPM: 85.4
RHH5314_R3681
98.9
RHH5222_R3594
133.0
RHH5251_R3623
109.9
RHH5280_R3652
85.4
Non-classical monocyte nTPM: 96.5
Samples: 4
Max nTPM: 99.5
Min nTPM: 90.5
RHH5315_R3682
98.9
RHH5223_R3595
90.5
RHH5252_R3624
97.0
RHH5281_R3653
99.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
176.0
Schmiedel sample id
TPM
Classical monocyte TPM: 176.0
Samples: 91
Max TPM: 209.4
Min TPM: 136.6
MONOCYTES_1
209.4
MONOCYTES_2
206.5
MONOCYTES_3
205.4
MONOCYTES_4
203.1
MONOCYTES_5
200.8
MONOCYTES_6
197.5
MONOCYTES_7
197.5
MONOCYTES_8
195.1
MONOCYTES_9
195.0
MONOCYTES_10
194.4
MONOCYTES_11
193.4
MONOCYTES_12
192.4
MONOCYTES_13
192.3
MONOCYTES_14
192.0
MONOCYTES_15
191.5
MONOCYTES_16
191.2
MONOCYTES_17
191.0
MONOCYTES_18
191.0
MONOCYTES_19
190.9
MONOCYTES_20
190.7
MONOCYTES_21
190.4
MONOCYTES_22
189.5
MONOCYTES_23
189.2
MONOCYTES_24
189.1
MONOCYTES_25
188.5
MONOCYTES_26
187.7
MONOCYTES_27
187.2
MONOCYTES_28
186.9
MONOCYTES_29
186.9
MONOCYTES_30
186.9
MONOCYTES_31
186.6
MONOCYTES_32
184.7
MONOCYTES_33
183.6
MONOCYTES_34
183.6
MONOCYTES_35
182.8
MONOCYTES_36
182.6
MONOCYTES_37
182.6
MONOCYTES_38
182.0
MONOCYTES_39
181.7
MONOCYTES_40
181.5
MONOCYTES_41
181.1
MONOCYTES_42
180.7
MONOCYTES_43
180.4
MONOCYTES_44
179.8
MONOCYTES_45
178.6
MONOCYTES_46
178.3
MONOCYTES_47
177.4
MONOCYTES_48
177.3
MONOCYTES_49
177.3
MONOCYTES_50
176.8
MONOCYTES_51
176.6
MONOCYTES_52
175.5
MONOCYTES_53
174.8
MONOCYTES_54
174.3
MONOCYTES_55
174.1
MONOCYTES_56
173.9
MONOCYTES_57
173.8
MONOCYTES_58
173.5
MONOCYTES_59
173.3
MONOCYTES_60
173.1
MONOCYTES_61
171.8
MONOCYTES_62
169.8
MONOCYTES_63
169.0
MONOCYTES_64
168.5
MONOCYTES_65
166.4
MONOCYTES_66
166.1
MONOCYTES_67
164.9
MONOCYTES_68
163.5
MONOCYTES_69
162.6
MONOCYTES_70
162.4
MONOCYTES_71
162.0
MONOCYTES_72
162.0
MONOCYTES_73
161.5
MONOCYTES_74
161.4
MONOCYTES_75
160.1
MONOCYTES_76
159.5
MONOCYTES_77
159.1
MONOCYTES_78
159.1
MONOCYTES_79
157.4
MONOCYTES_80
154.2
MONOCYTES_81
152.2
MONOCYTES_82
150.1
MONOCYTES_83
148.8
MONOCYTES_84
148.4
MONOCYTES_85
147.1
MONOCYTES_86
145.3
MONOCYTES_87
140.0
MONOCYTES_88
139.5
MONOCYTES_89
139.0
MONOCYTES_90
138.8
MONOCYTES_91
136.6
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Non-classical monocyte TPM: 160.3
Samples: 90
Max TPM: 194.6
Min TPM: 114.5
M2_1
194.6
M2_2
194.5
M2_3
187.4
M2_4
185.1
M2_5
183.7
M2_6
183.3
M2_7
182.6
M2_8
182.3
M2_9
182.3
M2_10
181.6
M2_11
180.8
M2_12
180.7
M2_13
177.2
M2_14
176.3
M2_15
175.8
M2_16
175.5
M2_17
175.5
M2_18
175.4
M2_19
175.2
M2_20
175.0
M2_21
174.3
M2_22
174.2
M2_23
173.3
M2_24
173.2
M2_25
173.1
M2_26
171.6
M2_27
171.3
M2_28
171.2
M2_29
171.1
M2_30
169.8
M2_31
169.5
M2_32
167.3
M2_33
167.3
M2_34
165.8
M2_35
165.6
M2_36
165.4
M2_37
164.2
M2_38
164.1
M2_39
164.0
M2_40
163.8
M2_41
163.4
M2_42
163.3
M2_43
162.8
M2_44
162.6
M2_45
162.3
M2_46
161.8
M2_47
161.6
M2_48
161.5
M2_49
161.1
M2_50
160.9
M2_51
160.0
M2_52
159.4
M2_53
159.3
M2_54
159.3
M2_55
159.2
M2_56
158.7
M2_57
158.5
M2_58
157.8
M2_59
156.7
M2_60
156.5
M2_61
155.7
M2_62
155.2
M2_63
155.1
M2_64
154.8
M2_65
154.4
M2_66
151.2
M2_67
151.2
M2_68
150.9
M2_69
150.1
M2_70
148.4
M2_71
146.8
M2_72
143.9
M2_73
142.6
M2_74
142.6
M2_75
142.2
M2_76
140.8
M2_77
140.6
M2_78
139.5
M2_79
139.2
M2_80
138.5
M2_81
138.0
M2_82
131.4
M2_83
130.7
M2_84
130.5
M2_85
130.3
M2_86
126.8
M2_87
124.8
M2_88
123.4
M2_89
122.7
M2_90
114.5
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