A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.8
nTPM
Monaco:
90.8
nTPM
Schmiedel:
71.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.8
HPA sample
nTPM
Memory B-cell nTPM: 12.7
Samples: 6
Max nTPM: 20.3
Min nTPM: 9.1
P10809_1017
20.3
P10809_1025
10.2
P10809_1044
9.1
P10809_1063
9.7
P10809_1092
15.2
P10809_1105
11.4
Naive B-cell nTPM: 12.9
Samples: 6
Max nTPM: 23.2
Min nTPM: 4.8
P10809_1011
23.2
P10809_1029
11.8
P10809_1048
4.8
P10809_1067
10.3
P10809_1091
12.8
P10809_1104
14.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 83.5
Samples: 4
Max nTPM: 104.1
Min nTPM: 66.6
RHH5310_R3677
75.0
RHH5218_R3590
104.1
RHH5247_R3619
66.6
RHH5276_R3648
88.4
Naive B-cell nTPM: 89.4
Samples: 4
Max nTPM: 104.7
Min nTPM: 68.6
RHH5308_R3675
92.9
RHH5216_R3588
68.6
RHH5245_R3617
104.7
RHH5274_R3646
91.6
Non-switched memory B-cell nTPM: 90.8
Samples: 4
Max nTPM: 108.5
Min nTPM: 75.0
RHH5309_R3676
108.5
RHH5217_R3589
75.0
RHH5246_R3618
79.1
RHH5275_R3647
100.4
Plasmablast nTPM: 28.7
Samples: 4
Max nTPM: 40.5
Min nTPM: 11.8
RHH5312_R3679
11.8
RHH5220_R3592
40.5
RHH5249_R3621
30.7
RHH5278_R3650
31.7
Switched memory B-cell nTPM: 71.3
Samples: 4
Max nTPM: 95.8
Min nTPM: 37.9
RHH5311_R3678
37.9
RHH5219_R3591
95.8
RHH5248_R3620
70.4
RHH5277_R3649
80.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.8
Schmiedel sample id
TPM
Naive B-cell TPM: 71.8
Samples: 91
Max TPM: 106.2
Min TPM: 23.4
B_CELL_NAIVE_1
106.2
B_CELL_NAIVE_2
102.8
B_CELL_NAIVE_3
101.8
B_CELL_NAIVE_4
100.1
B_CELL_NAIVE_5
99.8
B_CELL_NAIVE_6
99.6
B_CELL_NAIVE_7
97.3
B_CELL_NAIVE_8
96.8
B_CELL_NAIVE_9
95.9
B_CELL_NAIVE_10
95.8
B_CELL_NAIVE_11
94.0
B_CELL_NAIVE_12
94.0
B_CELL_NAIVE_13
93.8
B_CELL_NAIVE_14
93.4
B_CELL_NAIVE_15
92.9
B_CELL_NAIVE_16
91.6
B_CELL_NAIVE_17
91.5
B_CELL_NAIVE_18
89.5
B_CELL_NAIVE_19
88.8
B_CELL_NAIVE_20
88.4
B_CELL_NAIVE_21
88.2
B_CELL_NAIVE_22
88.1
B_CELL_NAIVE_23
87.7
B_CELL_NAIVE_24
87.7
B_CELL_NAIVE_25
87.7
B_CELL_NAIVE_26
86.4
B_CELL_NAIVE_27
85.8
B_CELL_NAIVE_28
85.4
B_CELL_NAIVE_29
83.5
B_CELL_NAIVE_30
82.5
B_CELL_NAIVE_31
82.0
B_CELL_NAIVE_32
81.0
B_CELL_NAIVE_33
80.8
B_CELL_NAIVE_34
80.1
B_CELL_NAIVE_35
79.8
B_CELL_NAIVE_36
79.1
B_CELL_NAIVE_37
78.9
B_CELL_NAIVE_38
78.4
B_CELL_NAIVE_39
78.1
B_CELL_NAIVE_40
77.9
B_CELL_NAIVE_41
77.4
B_CELL_NAIVE_42
77.2
B_CELL_NAIVE_43
76.5
B_CELL_NAIVE_44
75.6
B_CELL_NAIVE_45
74.3
B_CELL_NAIVE_46
74.0
B_CELL_NAIVE_47
74.0
B_CELL_NAIVE_48
73.8
B_CELL_NAIVE_49
72.9
B_CELL_NAIVE_50
71.7
B_CELL_NAIVE_51
70.9
B_CELL_NAIVE_52
70.6
B_CELL_NAIVE_53
70.2
B_CELL_NAIVE_54
69.5
B_CELL_NAIVE_55
69.0
B_CELL_NAIVE_56
68.7
B_CELL_NAIVE_57
68.4
B_CELL_NAIVE_58
67.0
B_CELL_NAIVE_59
66.4
B_CELL_NAIVE_60
65.8
B_CELL_NAIVE_61
65.5
B_CELL_NAIVE_62
64.7
B_CELL_NAIVE_63
64.1
B_CELL_NAIVE_64
63.3
B_CELL_NAIVE_65
63.3
B_CELL_NAIVE_66
62.5
B_CELL_NAIVE_67
60.0
B_CELL_NAIVE_68
59.9
B_CELL_NAIVE_69
59.2
B_CELL_NAIVE_70
57.7
B_CELL_NAIVE_71
56.7
B_CELL_NAIVE_72
56.0
B_CELL_NAIVE_73
55.7
B_CELL_NAIVE_74
55.3
B_CELL_NAIVE_75
53.8
B_CELL_NAIVE_76
51.5
B_CELL_NAIVE_77
51.2
B_CELL_NAIVE_78
50.4
B_CELL_NAIVE_79
49.9
B_CELL_NAIVE_80
46.6
B_CELL_NAIVE_81
45.5
B_CELL_NAIVE_82
42.5
B_CELL_NAIVE_83
40.7
B_CELL_NAIVE_84
37.9
B_CELL_NAIVE_85
37.3
B_CELL_NAIVE_86
36.4
B_CELL_NAIVE_87
35.4
B_CELL_NAIVE_88
26.5
B_CELL_NAIVE_89
26.5
B_CELL_NAIVE_90
25.9
B_CELL_NAIVE_91
23.4
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