A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.3
nTPM
Monaco:
217.1
nTPM
Schmiedel:
267.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.3
HPA sample
nTPM
Classical monocyte nTPM: 19.6
Samples: 6
Max nTPM: 35.7
Min nTPM: 7.5
P10809_1003
35.7
P10809_1020
16.7
P10809_1039
7.5
P10809_1058
18.4
P10809_1080
17.0
P10809_1107
22.1
Intermediate monocyte nTPM: 23.7
Samples: 6
Max nTPM: 43.4
Min nTPM: 13.8
P10809_1004
43.4
P10809_1023
18.0
P10809_1042
21.4
P10809_1061
19.0
P10809_1081
13.8
P10809_1108
26.6
Non-classical monocyte nTPM: 33.3
Samples: 5
Max nTPM: 46.2
Min nTPM: 23.5
P10809_1005
46.2
P10809_1053
23.5
P10809_1072
41.5
P10809_1082
27.4
P10809_1109
27.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
217.1
Monaco sample
nTPM
Classical monocyte nTPM: 155.1
Samples: 4
Max nTPM: 189.0
Min nTPM: 132.7
RHH5313_R3680
147.3
RHH5221_R3593
189.0
RHH5250_R3622
132.7
RHH5279_R3651
151.3
Intermediate monocyte nTPM: 175.7
Samples: 4
Max nTPM: 274.3
Min nTPM: 111.7
RHH5314_R3681
150.5
RHH5222_R3594
274.3
RHH5251_R3623
166.2
RHH5280_R3652
111.7
Non-classical monocyte nTPM: 217.1
Samples: 4
Max nTPM: 287.2
Min nTPM: 159.2
RHH5315_R3682
247.3
RHH5223_R3595
287.2
RHH5252_R3624
159.2
RHH5281_R3653
174.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
267.4
Schmiedel sample id
TPM
Classical monocyte TPM: 138.2
Samples: 91
Max TPM: 203.4
Min TPM: 83.3
MONOCYTES_1
203.4
MONOCYTES_2
197.0
MONOCYTES_3
185.7
MONOCYTES_4
185.7
MONOCYTES_5
181.7
MONOCYTES_6
178.7
MONOCYTES_7
177.6
MONOCYTES_8
176.4
MONOCYTES_9
175.9
MONOCYTES_10
174.6
MONOCYTES_11
174.4
MONOCYTES_12
173.5
MONOCYTES_13
170.0
MONOCYTES_14
169.8
MONOCYTES_15
169.6
MONOCYTES_16
169.6
MONOCYTES_17
169.3
MONOCYTES_18
168.3
MONOCYTES_19
168.2
MONOCYTES_20
166.5
MONOCYTES_21
162.7
MONOCYTES_22
161.6
MONOCYTES_23
160.6
MONOCYTES_24
160.2
MONOCYTES_25
159.1
MONOCYTES_26
158.2
MONOCYTES_27
157.8
MONOCYTES_28
157.6
MONOCYTES_29
155.1
MONOCYTES_30
154.8
MONOCYTES_31
154.1
MONOCYTES_32
151.7
MONOCYTES_33
150.2
MONOCYTES_34
149.2
MONOCYTES_35
149.0
MONOCYTES_36
147.1
MONOCYTES_37
146.5
MONOCYTES_38
146.4
MONOCYTES_39
144.0
MONOCYTES_40
140.3
MONOCYTES_41
139.2
MONOCYTES_42
139.1
MONOCYTES_43
138.9
MONOCYTES_44
137.6
MONOCYTES_45
136.5
MONOCYTES_46
136.2
MONOCYTES_47
134.7
MONOCYTES_48
134.0
MONOCYTES_49
133.5
MONOCYTES_50
132.4
MONOCYTES_51
131.5
MONOCYTES_52
131.4
MONOCYTES_53
130.2
MONOCYTES_54
129.7
MONOCYTES_55
125.4
MONOCYTES_56
125.2
MONOCYTES_57
124.0
MONOCYTES_58
123.7
MONOCYTES_59
122.7
MONOCYTES_60
122.4
MONOCYTES_61
120.7
MONOCYTES_62
120.4
MONOCYTES_63
120.1
MONOCYTES_64
119.4
MONOCYTES_65
119.2
MONOCYTES_66
118.2
MONOCYTES_67
117.5
MONOCYTES_68
117.2
MONOCYTES_69
116.3
MONOCYTES_70
116.3
MONOCYTES_71
115.2
MONOCYTES_72
114.7
MONOCYTES_73
113.8
MONOCYTES_74
112.1
MONOCYTES_75
109.9
MONOCYTES_76
109.7
MONOCYTES_77
108.4
MONOCYTES_78
106.6
MONOCYTES_79
106.3
MONOCYTES_80
105.5
MONOCYTES_81
105.3
MONOCYTES_82
104.0
MONOCYTES_83
103.7
MONOCYTES_84
101.4
MONOCYTES_85
98.9
MONOCYTES_86
96.4
MONOCYTES_87
96.1
MONOCYTES_88
94.3
MONOCYTES_89
93.4
MONOCYTES_90
83.7
MONOCYTES_91
83.3
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Non-classical monocyte TPM: 267.4
Samples: 90
Max TPM: 417.2
Min TPM: 108.8
M2_1
417.2
M2_2
385.4
M2_3
380.3
M2_4
370.8
M2_5
364.4
M2_6
364.1
M2_7
363.6
M2_8
362.7
M2_9
355.2
M2_10
349.2
M2_11
341.9
M2_12
340.6
M2_13
340.4
M2_14
338.0
M2_15
336.2
M2_16
330.7
M2_17
330.0
M2_18
328.3
M2_19
327.3
M2_20
326.9
M2_21
326.0
M2_22
324.2
M2_23
320.1
M2_24
317.9
M2_25
311.7
M2_26
309.9
M2_27
309.6
M2_28
308.4
M2_29
306.9
M2_30
306.2
M2_31
305.3
M2_32
303.2
M2_33
302.0
M2_34
301.1
M2_35
296.5
M2_36
293.3
M2_37
293.2
M2_38
292.2
M2_39
290.7
M2_40
288.9
M2_41
282.8
M2_42
281.7
M2_43
280.1
M2_44
276.8
M2_45
274.5
M2_46
270.9
M2_47
269.0
M2_48
269.0
M2_49
268.6
M2_50
267.5
M2_51
265.3
M2_52
261.1
M2_53
260.0
M2_54
255.2
M2_55
248.8
M2_56
248.4
M2_57
248.3
M2_58
236.0
M2_59
234.5
M2_60
234.4
M2_61
233.3
M2_62
232.5
M2_63
232.4
M2_64
232.1
M2_65
223.7
M2_66
218.9
M2_67
217.6
M2_68
216.2
M2_69
213.2
M2_70
212.6
M2_71
207.4
M2_72
205.7
M2_73
204.6
M2_74
203.9
M2_75
200.3
M2_76
196.5
M2_77
196.4
M2_78
188.2
M2_79
174.7
M2_80
174.3
M2_81
174.1
M2_82
171.3
M2_83
166.5
M2_84
157.1
M2_85
154.9
M2_86
154.4
M2_87
148.4
M2_88
139.4
M2_89
115.7
M2_90
108.8
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