A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.9
nTPM
Monaco:
198.9
nTPM
Schmiedel:
84.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.9
HPA sample
nTPM
Memory B-cell nTPM: 17.9
Samples: 6
Max nTPM: 32.0
Min nTPM: 2.2
P10809_1017
27.9
P10809_1025
13.0
P10809_1044
2.2
P10809_1063
21.6
P10809_1092
10.6
P10809_1105
32.0
Naive B-cell nTPM: 16.8
Samples: 6
Max nTPM: 24.4
Min nTPM: 3.0
P10809_1011
24.4
P10809_1029
20.4
P10809_1048
3.0
P10809_1067
14.2
P10809_1091
20.3
P10809_1104
18.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
198.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 173.1
Samples: 4
Max nTPM: 208.7
Min nTPM: 137.7
RHH5310_R3677
190.1
RHH5218_R3590
137.7
RHH5247_R3619
155.9
RHH5276_R3648
208.7
Naive B-cell nTPM: 198.9
Samples: 4
Max nTPM: 229.3
Min nTPM: 165.6
RHH5308_R3675
189.4
RHH5216_R3588
211.4
RHH5245_R3617
229.3
RHH5274_R3646
165.6
Non-switched memory B-cell nTPM: 184.7
Samples: 4
Max nTPM: 212.4
Min nTPM: 161.9
RHH5309_R3676
212.4
RHH5217_R3589
193.3
RHH5246_R3618
161.9
RHH5275_R3647
171.3
Plasmablast nTPM: 95.9
Samples: 4
Max nTPM: 109.5
Min nTPM: 89.0
RHH5312_R3679
109.5
RHH5220_R3592
95.3
RHH5249_R3621
89.7
RHH5278_R3650
89.0
Switched memory B-cell nTPM: 175.6
Samples: 4
Max nTPM: 189.9
Min nTPM: 168.9
RHH5311_R3678
189.9
RHH5219_R3591
168.9
RHH5248_R3620
173.5
RHH5277_R3649
170.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.2
Schmiedel sample id
TPM
Naive B-cell TPM: 84.2
Samples: 91
Max TPM: 156.9
Min TPM: 12.3
B_CELL_NAIVE_1
156.9
B_CELL_NAIVE_2
156.7
B_CELL_NAIVE_3
156.6
B_CELL_NAIVE_4
155.8
B_CELL_NAIVE_5
155.5
B_CELL_NAIVE_6
150.9
B_CELL_NAIVE_7
148.5
B_CELL_NAIVE_8
135.2
B_CELL_NAIVE_9
134.3
B_CELL_NAIVE_10
133.8
B_CELL_NAIVE_11
133.7
B_CELL_NAIVE_12
132.5
B_CELL_NAIVE_13
132.2
B_CELL_NAIVE_14
131.7
B_CELL_NAIVE_15
122.6
B_CELL_NAIVE_16
122.6
B_CELL_NAIVE_17
120.5
B_CELL_NAIVE_18
117.4
B_CELL_NAIVE_19
116.3
B_CELL_NAIVE_20
113.9
B_CELL_NAIVE_21
113.9
B_CELL_NAIVE_22
111.4
B_CELL_NAIVE_23
110.7
B_CELL_NAIVE_24
106.6
B_CELL_NAIVE_25
103.5
B_CELL_NAIVE_26
102.6
B_CELL_NAIVE_27
102.2
B_CELL_NAIVE_28
100.4
B_CELL_NAIVE_29
100.1
B_CELL_NAIVE_30
99.9
B_CELL_NAIVE_31
98.6
B_CELL_NAIVE_32
98.1
B_CELL_NAIVE_33
96.2
B_CELL_NAIVE_34
95.9
B_CELL_NAIVE_35
95.0
B_CELL_NAIVE_36
94.6
B_CELL_NAIVE_37
94.1
B_CELL_NAIVE_38
92.5
B_CELL_NAIVE_39
92.4
B_CELL_NAIVE_40
91.3
B_CELL_NAIVE_41
90.3
B_CELL_NAIVE_42
89.8
B_CELL_NAIVE_43
88.8
B_CELL_NAIVE_44
87.5
B_CELL_NAIVE_45
87.5
B_CELL_NAIVE_46
86.3
B_CELL_NAIVE_47
86.0
B_CELL_NAIVE_48
80.7
B_CELL_NAIVE_49
80.0
B_CELL_NAIVE_50
79.8
B_CELL_NAIVE_51
78.1
B_CELL_NAIVE_52
76.7
B_CELL_NAIVE_53
76.6
B_CELL_NAIVE_54
75.5
B_CELL_NAIVE_55
72.6
B_CELL_NAIVE_56
72.1
B_CELL_NAIVE_57
71.6
B_CELL_NAIVE_58
71.5
B_CELL_NAIVE_59
69.6
B_CELL_NAIVE_60
69.3
B_CELL_NAIVE_61
68.8
B_CELL_NAIVE_62
65.0
B_CELL_NAIVE_63
62.7
B_CELL_NAIVE_64
62.4
B_CELL_NAIVE_65
61.8
B_CELL_NAIVE_66
61.6
B_CELL_NAIVE_67
61.2
B_CELL_NAIVE_68
61.1
B_CELL_NAIVE_69
60.8
B_CELL_NAIVE_70
60.7
B_CELL_NAIVE_71
55.1
B_CELL_NAIVE_72
51.0
B_CELL_NAIVE_73
50.9
B_CELL_NAIVE_74
50.8
B_CELL_NAIVE_75
46.7
B_CELL_NAIVE_76
46.4
B_CELL_NAIVE_77
43.3
B_CELL_NAIVE_78
42.9
B_CELL_NAIVE_79
39.6
B_CELL_NAIVE_80
36.5
B_CELL_NAIVE_81
32.8
B_CELL_NAIVE_82
32.7
B_CELL_NAIVE_83
32.7
B_CELL_NAIVE_84
29.1
B_CELL_NAIVE_85
28.4
B_CELL_NAIVE_86
22.0
B_CELL_NAIVE_87
18.7
B_CELL_NAIVE_88
17.1
B_CELL_NAIVE_89
14.2
B_CELL_NAIVE_90
12.5
B_CELL_NAIVE_91
12.3
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The Human Protein Atlas project is funded
