A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
59.2
nTPM
Monaco:
390.4
nTPM
Schmiedel:
151.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.2
HPA sample
nTPM
Classical monocyte nTPM: 25.9
Samples: 6
Max nTPM: 36.1
Min nTPM: 16.5
P10809_1003
36.1
P10809_1020
24.4
P10809_1039
16.5
P10809_1058
21.4
P10809_1080
25.0
P10809_1107
32.1
Intermediate monocyte nTPM: 42.1
Samples: 6
Max nTPM: 60.9
Min nTPM: 26.3
P10809_1004
60.9
P10809_1023
33.1
P10809_1042
43.9
P10809_1061
51.7
P10809_1081
26.3
P10809_1108
36.9
Non-classical monocyte nTPM: 59.2
Samples: 5
Max nTPM: 90.9
Min nTPM: 32.2
P10809_1005
72.8
P10809_1053
48.2
P10809_1072
90.9
P10809_1082
32.2
P10809_1109
51.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
390.4
Monaco sample
nTPM
Classical monocyte nTPM: 213.7
Samples: 4
Max nTPM: 236.4
Min nTPM: 197.4
RHH5313_R3680
200.2
RHH5221_R3593
220.7
RHH5250_R3622
236.4
RHH5279_R3651
197.4
Intermediate monocyte nTPM: 309.0
Samples: 4
Max nTPM: 408.5
Min nTPM: 262.1
RHH5314_R3681
262.1
RHH5222_R3594
408.5
RHH5251_R3623
296.2
RHH5280_R3652
269.3
Non-classical monocyte nTPM: 390.4
Samples: 4
Max nTPM: 472.9
Min nTPM: 344.8
RHH5315_R3682
344.8
RHH5223_R3595
472.9
RHH5252_R3624
350.7
RHH5281_R3653
393.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
151.1
Schmiedel sample id
TPM
Classical monocyte TPM: 109.7
Samples: 91
Max TPM: 219.8
Min TPM: 44.9
MONOCYTES_1
219.8
MONOCYTES_2
213.0
MONOCYTES_3
187.9
MONOCYTES_4
186.1
MONOCYTES_5
172.6
MONOCYTES_6
172.4
MONOCYTES_7
171.7
MONOCYTES_8
167.6
MONOCYTES_9
163.2
MONOCYTES_10
160.9
MONOCYTES_11
159.7
MONOCYTES_12
159.7
MONOCYTES_13
158.1
MONOCYTES_14
157.7
MONOCYTES_15
155.4
MONOCYTES_16
155.2
MONOCYTES_17
148.8
MONOCYTES_18
147.6
MONOCYTES_19
145.7
MONOCYTES_20
145.1
MONOCYTES_21
144.7
MONOCYTES_22
144.4
MONOCYTES_23
144.2
MONOCYTES_24
143.8
MONOCYTES_25
143.5
MONOCYTES_26
142.4
MONOCYTES_27
142.3
MONOCYTES_28
141.8
MONOCYTES_29
136.0
MONOCYTES_30
133.9
MONOCYTES_31
132.6
MONOCYTES_32
125.9
MONOCYTES_33
123.9
MONOCYTES_34
123.7
MONOCYTES_35
120.6
MONOCYTES_36
119.0
MONOCYTES_37
117.6
MONOCYTES_38
116.3
MONOCYTES_39
111.8
MONOCYTES_40
105.5
MONOCYTES_41
105.3
MONOCYTES_42
104.8
MONOCYTES_43
104.6
MONOCYTES_44
104.2
MONOCYTES_45
103.9
MONOCYTES_46
103.0
MONOCYTES_47
102.9
MONOCYTES_48
99.6
MONOCYTES_49
98.9
MONOCYTES_50
96.7
MONOCYTES_51
94.7
MONOCYTES_52
93.9
MONOCYTES_53
91.7
MONOCYTES_54
91.5
MONOCYTES_55
90.9
MONOCYTES_56
90.1
MONOCYTES_57
89.4
MONOCYTES_58
88.9
MONOCYTES_59
88.9
MONOCYTES_60
88.3
MONOCYTES_61
86.5
MONOCYTES_62
85.6
MONOCYTES_63
85.5
MONOCYTES_64
84.4
MONOCYTES_65
83.0
MONOCYTES_66
82.6
MONOCYTES_67
80.7
MONOCYTES_68
79.9
MONOCYTES_69
79.6
MONOCYTES_70
73.8
MONOCYTES_71
73.7
MONOCYTES_72
73.0
MONOCYTES_73
72.9
MONOCYTES_74
71.9
MONOCYTES_75
71.4
MONOCYTES_76
70.8
MONOCYTES_77
68.8
MONOCYTES_78
66.9
MONOCYTES_79
65.5
MONOCYTES_80
63.4
MONOCYTES_81
62.0
MONOCYTES_82
60.3
MONOCYTES_83
54.5
MONOCYTES_84
53.3
MONOCYTES_85
53.3
MONOCYTES_86
50.6
MONOCYTES_87
50.2
MONOCYTES_88
48.1
MONOCYTES_89
47.4
MONOCYTES_90
47.3
MONOCYTES_91
44.9
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Non-classical monocyte TPM: 151.1
Samples: 90
Max TPM: 305.9
Min TPM: 33.6
M2_1
305.9
M2_2
296.6
M2_3
287.8
M2_4
274.9
M2_5
263.6
M2_6
255.3
M2_7
248.6
M2_8
244.6
M2_9
241.3
M2_10
239.7
M2_11
233.3
M2_12
233.2
M2_13
231.1
M2_14
221.2
M2_15
218.1
M2_16
214.1
M2_17
209.5
M2_18
207.6
M2_19
203.6
M2_20
202.2
M2_21
201.6
M2_22
191.9
M2_23
191.7
M2_24
191.3
M2_25
189.1
M2_26
189.1
M2_27
189.1
M2_28
186.8
M2_29
186.7
M2_30
181.4
M2_31
177.7
M2_32
177.4
M2_33
176.8
M2_34
173.6
M2_35
170.4
M2_36
166.6
M2_37
164.3
M2_38
164.0
M2_39
160.5
M2_40
159.7
M2_41
158.4
M2_42
156.9
M2_43
150.8
M2_44
146.2
M2_45
145.5
M2_46
145.4
M2_47
144.9
M2_48
143.2
M2_49
142.3
M2_50
141.0
M2_51
140.6
M2_52
138.6
M2_53
137.0
M2_54
133.0
M2_55
132.4
M2_56
131.9
M2_57
129.0
M2_58
126.3
M2_59
126.2
M2_60
118.2
M2_61
117.8
M2_62
114.9
M2_63
112.9
M2_64
112.6
M2_65
112.6
M2_66
108.4
M2_67
99.7
M2_68
98.4
M2_69
97.7
M2_70
95.5
M2_71
94.7
M2_72
94.1
M2_73
90.1
M2_74
85.2
M2_75
81.4
M2_76
75.4
M2_77
73.0
M2_78
68.5
M2_79
65.3
M2_80
65.2
M2_81
63.4
M2_82
63.4
M2_83
60.9
M2_84
60.2
M2_85
58.4
M2_86
57.0
M2_87
49.6
M2_88
44.2
M2_89
38.6
M2_90
33.6
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