A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.3
nTPM
Monaco:
8.4
nTPM
Schmiedel:
42.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.3
HPA sample
nTPM
Memory B-cell nTPM: 0.4
Samples: 6
Max nTPM: 0.8
Min nTPM: 0.0
P10809_1017
0.5
P10809_1025
0.4
P10809_1044
0.0
P10809_1063
0.1
P10809_1092
0.8
P10809_1105
0.3
Naive B-cell nTPM: 0.4
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1011
0.6
P10809_1029
0.5
P10809_1048
0.0
P10809_1067
0.2
P10809_1091
0.3
P10809_1104
0.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 6.8
Samples: 4
Max nTPM: 9.7
Min nTPM: 3.9
RHH5310_R3677
6.5
RHH5218_R3590
7.1
RHH5247_R3619
9.7
RHH5276_R3648
3.9
Naive B-cell nTPM: 8.4
Samples: 4
Max nTPM: 12.6
Min nTPM: 4.8
RHH5308_R3675
9.5
RHH5216_R3588
6.7
RHH5245_R3617
12.6
RHH5274_R3646
4.8
Non-switched memory B-cell nTPM: 6.8
Samples: 4
Max nTPM: 11.1
Min nTPM: 4.8
RHH5309_R3676
5.7
RHH5217_R3589
5.7
RHH5246_R3618
11.1
RHH5275_R3647
4.8
Plasmablast nTPM: 4.6
Samples: 4
Max nTPM: 4.9
Min nTPM: 4.1
RHH5312_R3679
4.8
RHH5220_R3592
4.9
RHH5249_R3621
4.1
RHH5278_R3650
4.8
Switched memory B-cell nTPM: 7.5
Samples: 4
Max nTPM: 8.5
Min nTPM: 5.8
RHH5311_R3678
5.8
RHH5219_R3591
8.5
RHH5248_R3620
7.7
RHH5277_R3649
8.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.2
Schmiedel sample id
TPM
Naive B-cell TPM: 42.2
Samples: 91
Max TPM: 55.2
Min TPM: 26.8
B_CELL_NAIVE_1
55.2
B_CELL_NAIVE_2
54.7
B_CELL_NAIVE_3
54.7
B_CELL_NAIVE_4
54.1
B_CELL_NAIVE_5
52.7
B_CELL_NAIVE_6
51.6
B_CELL_NAIVE_7
51.5
B_CELL_NAIVE_8
50.5
B_CELL_NAIVE_9
50.3
B_CELL_NAIVE_10
49.9
B_CELL_NAIVE_11
49.9
B_CELL_NAIVE_12
48.9
B_CELL_NAIVE_13
48.5
B_CELL_NAIVE_14
48.1
B_CELL_NAIVE_15
47.9
B_CELL_NAIVE_16
47.8
B_CELL_NAIVE_17
47.7
B_CELL_NAIVE_18
47.4
B_CELL_NAIVE_19
47.3
B_CELL_NAIVE_20
47.3
B_CELL_NAIVE_21
47.1
B_CELL_NAIVE_22
46.5
B_CELL_NAIVE_23
46.5
B_CELL_NAIVE_24
45.9
B_CELL_NAIVE_25
45.9
B_CELL_NAIVE_26
45.9
B_CELL_NAIVE_27
45.8
B_CELL_NAIVE_28
45.4
B_CELL_NAIVE_29
45.0
B_CELL_NAIVE_30
45.0
B_CELL_NAIVE_31
44.9
B_CELL_NAIVE_32
44.9
B_CELL_NAIVE_33
44.8
B_CELL_NAIVE_34
44.0
B_CELL_NAIVE_35
43.8
B_CELL_NAIVE_36
43.7
B_CELL_NAIVE_37
43.5
B_CELL_NAIVE_38
43.2
B_CELL_NAIVE_39
42.9
B_CELL_NAIVE_40
42.9
B_CELL_NAIVE_41
42.6
B_CELL_NAIVE_42
42.6
B_CELL_NAIVE_43
42.5
B_CELL_NAIVE_44
42.3
B_CELL_NAIVE_45
42.2
B_CELL_NAIVE_46
42.1
B_CELL_NAIVE_47
42.1
B_CELL_NAIVE_48
42.0
B_CELL_NAIVE_49
41.4
B_CELL_NAIVE_50
41.4
B_CELL_NAIVE_51
41.2
B_CELL_NAIVE_52
40.8
B_CELL_NAIVE_53
40.5
B_CELL_NAIVE_54
40.3
B_CELL_NAIVE_55
40.1
B_CELL_NAIVE_56
40.1
B_CELL_NAIVE_57
39.8
B_CELL_NAIVE_58
39.5
B_CELL_NAIVE_59
39.4
B_CELL_NAIVE_60
39.2
B_CELL_NAIVE_61
39.1
B_CELL_NAIVE_62
39.1
B_CELL_NAIVE_63
39.0
B_CELL_NAIVE_64
38.8
B_CELL_NAIVE_65
38.8
B_CELL_NAIVE_66
38.8
B_CELL_NAIVE_67
38.7
B_CELL_NAIVE_68
38.7
B_CELL_NAIVE_69
38.3
B_CELL_NAIVE_70
38.3
B_CELL_NAIVE_71
38.2
B_CELL_NAIVE_72
38.0
B_CELL_NAIVE_73
37.9
B_CELL_NAIVE_74
37.8
B_CELL_NAIVE_75
37.6
B_CELL_NAIVE_76
37.6
B_CELL_NAIVE_77
37.5
B_CELL_NAIVE_78
37.5
B_CELL_NAIVE_79
37.3
B_CELL_NAIVE_80
37.0
B_CELL_NAIVE_81
36.4
B_CELL_NAIVE_82
35.0
B_CELL_NAIVE_83
34.2
B_CELL_NAIVE_84
33.3
B_CELL_NAIVE_85
32.7
B_CELL_NAIVE_86
31.3
B_CELL_NAIVE_87
31.0
B_CELL_NAIVE_88
29.6
B_CELL_NAIVE_89
28.7
B_CELL_NAIVE_90
27.3
B_CELL_NAIVE_91
26.8
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The Human Protein Atlas project is funded
