A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.8
nTPM
Monaco:
16.0
nTPM
Schmiedel:
110.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.8
HPA sample
nTPM
Classical monocyte nTPM: 1.5
Samples: 6
Max nTPM: 1.6
Min nTPM: 1.2
P10809_1003
1.5
P10809_1020
1.2
P10809_1039
1.6
P10809_1058
1.4
P10809_1080
1.5
P10809_1107
1.5
Intermediate monocyte nTPM: 1.5
Samples: 6
Max nTPM: 2.1
Min nTPM: 1.0
P10809_1004
1.4
P10809_1023
1.4
P10809_1042
1.0
P10809_1061
2.1
P10809_1081
1.6
P10809_1108
1.7
Non-classical monocyte nTPM: 1.8
Samples: 5
Max nTPM: 2.6
Min nTPM: 0.6
P10809_1005
1.2
P10809_1053
2.3
P10809_1072
2.6
P10809_1082
2.2
P10809_1109
0.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.0
Monaco sample
nTPM
Classical monocyte nTPM: 16.0
Samples: 4
Max nTPM: 20.0
Min nTPM: 12.3
RHH5313_R3680
20.0
RHH5221_R3593
12.3
RHH5250_R3622
14.0
RHH5279_R3651
17.7
Intermediate monocyte nTPM: 14.9
Samples: 4
Max nTPM: 20.1
Min nTPM: 9.3
RHH5314_R3681
9.3
RHH5222_R3594
10.3
RHH5251_R3623
19.9
RHH5280_R3652
20.1
Non-classical monocyte nTPM: 15.4
Samples: 4
Max nTPM: 17.7
Min nTPM: 12.9
RHH5315_R3682
12.9
RHH5223_R3595
17.7
RHH5252_R3624
17.2
RHH5281_R3653
13.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
110.1
Schmiedel sample id
TPM
Classical monocyte TPM: 88.9
Samples: 91
Max TPM: 108.7
Min TPM: 65.2
MONOCYTES_1
108.7
MONOCYTES_2
107.3
MONOCYTES_3
107.0
MONOCYTES_4
105.5
MONOCYTES_5
104.7
MONOCYTES_6
103.0
MONOCYTES_7
102.1
MONOCYTES_8
102.1
MONOCYTES_9
101.9
MONOCYTES_10
101.2
MONOCYTES_11
101.0
MONOCYTES_12
101.0
MONOCYTES_13
100.0
MONOCYTES_14
100.0
MONOCYTES_15
99.1
MONOCYTES_16
98.8
MONOCYTES_17
97.9
MONOCYTES_18
97.2
MONOCYTES_19
97.1
MONOCYTES_20
96.9
MONOCYTES_21
96.6
MONOCYTES_22
96.6
MONOCYTES_23
96.4
MONOCYTES_24
95.7
MONOCYTES_25
95.6
MONOCYTES_26
95.6
MONOCYTES_27
95.6
MONOCYTES_28
94.5
MONOCYTES_29
94.3
MONOCYTES_30
94.1
MONOCYTES_31
93.8
MONOCYTES_32
93.5
MONOCYTES_33
93.4
MONOCYTES_34
92.7
MONOCYTES_35
92.6
MONOCYTES_36
92.4
MONOCYTES_37
91.7
MONOCYTES_38
91.6
MONOCYTES_39
91.5
MONOCYTES_40
91.3
MONOCYTES_41
91.3
MONOCYTES_42
90.4
MONOCYTES_43
90.3
MONOCYTES_44
90.0
MONOCYTES_45
89.4
MONOCYTES_46
89.4
MONOCYTES_47
88.5
MONOCYTES_48
88.2
MONOCYTES_49
88.0
MONOCYTES_50
86.6
MONOCYTES_51
86.3
MONOCYTES_52
86.0
MONOCYTES_53
85.7
MONOCYTES_54
85.6
MONOCYTES_55
85.1
MONOCYTES_56
84.8
MONOCYTES_57
84.6
MONOCYTES_58
84.2
MONOCYTES_59
83.9
MONOCYTES_60
83.5
MONOCYTES_61
83.4
MONOCYTES_62
83.2
MONOCYTES_63
82.8
MONOCYTES_64
82.8
MONOCYTES_65
82.5
MONOCYTES_66
82.4
MONOCYTES_67
81.4
MONOCYTES_68
80.8
MONOCYTES_69
80.6
MONOCYTES_70
80.0
MONOCYTES_71
79.8
MONOCYTES_72
79.7
MONOCYTES_73
79.5
MONOCYTES_74
79.4
MONOCYTES_75
79.2
MONOCYTES_76
79.0
MONOCYTES_77
78.5
MONOCYTES_78
78.5
MONOCYTES_79
78.3
MONOCYTES_80
77.9
MONOCYTES_81
77.8
MONOCYTES_82
77.7
MONOCYTES_83
77.4
MONOCYTES_84
77.4
MONOCYTES_85
77.2
MONOCYTES_86
76.4
MONOCYTES_87
74.2
MONOCYTES_88
74.1
MONOCYTES_89
73.9
MONOCYTES_90
72.3
MONOCYTES_91
65.2
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Non-classical monocyte TPM: 110.1
Samples: 90
Max TPM: 151.5
Min TPM: 77.6
M2_1
151.5
M2_2
140.9
M2_3
137.9
M2_4
135.1
M2_5
134.8
M2_6
134.1
M2_7
133.2
M2_8
132.9
M2_9
131.1
M2_10
130.7
M2_11
130.1
M2_12
127.6
M2_13
127.3
M2_14
127.2
M2_15
127.0
M2_16
126.8
M2_17
126.5
M2_18
125.8
M2_19
124.7
M2_20
123.3
M2_21
123.0
M2_22
122.6
M2_23
121.6
M2_24
121.4
M2_25
121.0
M2_26
120.5
M2_27
119.9
M2_28
119.9
M2_29
119.1
M2_30
118.5
M2_31
118.0
M2_32
117.5
M2_33
116.7
M2_34
115.6
M2_35
115.4
M2_36
114.6
M2_37
114.3
M2_38
114.1
M2_39
113.2
M2_40
113.0
M2_41
112.8
M2_42
112.5
M2_43
112.5
M2_44
112.2
M2_45
112.1
M2_46
110.9
M2_47
110.6
M2_48
108.7
M2_49
108.2
M2_50
107.7
M2_51
107.3
M2_52
106.4
M2_53
106.3
M2_54
104.9
M2_55
104.9
M2_56
104.4
M2_57
103.3
M2_58
102.0
M2_59
101.9
M2_60
101.6
M2_61
101.6
M2_62
101.5
M2_63
99.6
M2_64
99.3
M2_65
98.6
M2_66
98.5
M2_67
97.2
M2_68
97.2
M2_69
97.0
M2_70
96.3
M2_71
95.7
M2_72
95.6
M2_73
95.4
M2_74
95.2
M2_75
93.1
M2_76
92.8
M2_77
92.6
M2_78
92.2
M2_79
90.7
M2_80
90.7
M2_81
90.4
M2_82
89.9
M2_83
89.5
M2_84
88.0
M2_85
87.9
M2_86
86.6
M2_87
80.0
M2_88
79.8
M2_89
79.3
M2_90
77.6
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