A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.4
nTPM
Monaco:
27.2
nTPM
Schmiedel:
31.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.4
HPA sample
nTPM
Memory B-cell nTPM: 6.4
Samples: 6
Max nTPM: 14.5
Min nTPM: 2.6
P10809_1017
2.6
P10809_1025
5.4
P10809_1044
14.5
P10809_1063
4.8
P10809_1092
5.1
P10809_1105
5.8
Naive B-cell nTPM: 5.3
Samples: 6
Max nTPM: 15.3
Min nTPM: 2.3
P10809_1011
2.5
P10809_1029
3.3
P10809_1048
15.3
P10809_1067
2.3
P10809_1091
4.7
P10809_1104
3.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 27.3
Samples: 4
Max nTPM: 36.8
Min nTPM: 13.0
RHH5310_R3677
32.7
RHH5218_R3590
36.8
RHH5247_R3619
13.0
RHH5276_R3648
26.5
Naive B-cell nTPM: 23.5
Samples: 4
Max nTPM: 35.3
Min nTPM: 13.5
RHH5308_R3675
19.4
RHH5216_R3588
13.5
RHH5245_R3617
35.3
RHH5274_R3646
25.7
Non-switched memory B-cell nTPM: 21.7
Samples: 4
Max nTPM: 24.1
Min nTPM: 15.6
RHH5309_R3676
24.1
RHH5217_R3589
23.1
RHH5246_R3618
24.0
RHH5275_R3647
15.6
Plasmablast nTPM: 25.6
Samples: 4
Max nTPM: 40.0
Min nTPM: 18.3
RHH5312_R3679
24.7
RHH5220_R3592
19.4
RHH5249_R3621
18.3
RHH5278_R3650
40.0
Switched memory B-cell nTPM: 26.2
Samples: 4
Max nTPM: 29.0
Min nTPM: 18.4
RHH5311_R3678
28.4
RHH5219_R3591
18.4
RHH5248_R3620
29.0
RHH5277_R3649
29.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.4
Schmiedel sample id
TPM
Naive B-cell TPM: 31.4
Samples: 91
Max TPM: 43.1
Min TPM: 17.5
B_CELL_NAIVE_1
43.1
B_CELL_NAIVE_2
41.1
B_CELL_NAIVE_3
39.7
B_CELL_NAIVE_4
39.3
B_CELL_NAIVE_5
38.4
B_CELL_NAIVE_6
38.1
B_CELL_NAIVE_7
37.0
B_CELL_NAIVE_8
37.0
B_CELL_NAIVE_9
36.8
B_CELL_NAIVE_10
36.5
B_CELL_NAIVE_11
36.5
B_CELL_NAIVE_12
36.5
B_CELL_NAIVE_13
36.4
B_CELL_NAIVE_14
36.1
B_CELL_NAIVE_15
35.7
B_CELL_NAIVE_16
35.2
B_CELL_NAIVE_17
35.0
B_CELL_NAIVE_18
34.8
B_CELL_NAIVE_19
34.6
B_CELL_NAIVE_20
34.5
B_CELL_NAIVE_21
34.4
B_CELL_NAIVE_22
34.1
B_CELL_NAIVE_23
34.1
B_CELL_NAIVE_24
33.7
B_CELL_NAIVE_25
33.6
B_CELL_NAIVE_26
33.6
B_CELL_NAIVE_27
33.5
B_CELL_NAIVE_28
33.5
B_CELL_NAIVE_29
33.5
B_CELL_NAIVE_30
33.4
B_CELL_NAIVE_31
33.0
B_CELL_NAIVE_32
32.8
B_CELL_NAIVE_33
32.4
B_CELL_NAIVE_34
32.3
B_CELL_NAIVE_35
32.2
B_CELL_NAIVE_36
32.1
B_CELL_NAIVE_37
32.1
B_CELL_NAIVE_38
32.0
B_CELL_NAIVE_39
31.9
B_CELL_NAIVE_40
31.9
B_CELL_NAIVE_41
31.8
B_CELL_NAIVE_42
31.8
B_CELL_NAIVE_43
31.7
B_CELL_NAIVE_44
31.6
B_CELL_NAIVE_45
31.6
B_CELL_NAIVE_46
31.5
B_CELL_NAIVE_47
31.4
B_CELL_NAIVE_48
31.3
B_CELL_NAIVE_49
31.3
B_CELL_NAIVE_50
31.2
B_CELL_NAIVE_51
31.2
B_CELL_NAIVE_52
31.0
B_CELL_NAIVE_53
30.8
B_CELL_NAIVE_54
30.7
B_CELL_NAIVE_55
30.7
B_CELL_NAIVE_56
30.5
B_CELL_NAIVE_57
30.4
B_CELL_NAIVE_58
30.3
B_CELL_NAIVE_59
30.2
B_CELL_NAIVE_60
30.1
B_CELL_NAIVE_61
29.9
B_CELL_NAIVE_62
29.5
B_CELL_NAIVE_63
29.5
B_CELL_NAIVE_64
29.3
B_CELL_NAIVE_65
29.1
B_CELL_NAIVE_66
28.9
B_CELL_NAIVE_67
28.8
B_CELL_NAIVE_68
28.6
B_CELL_NAIVE_69
28.6
B_CELL_NAIVE_70
28.5
B_CELL_NAIVE_71
28.4
B_CELL_NAIVE_72
28.3
B_CELL_NAIVE_73
28.3
B_CELL_NAIVE_74
27.8
B_CELL_NAIVE_75
27.8
B_CELL_NAIVE_76
27.3
B_CELL_NAIVE_77
27.2
B_CELL_NAIVE_78
27.0
B_CELL_NAIVE_79
26.7
B_CELL_NAIVE_80
26.7
B_CELL_NAIVE_81
26.2
B_CELL_NAIVE_82
26.0
B_CELL_NAIVE_83
25.9
B_CELL_NAIVE_84
25.9
B_CELL_NAIVE_85
25.7
B_CELL_NAIVE_86
25.5
B_CELL_NAIVE_87
25.4
B_CELL_NAIVE_88
25.3
B_CELL_NAIVE_89
24.8
B_CELL_NAIVE_90
19.7
B_CELL_NAIVE_91
17.5
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