A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.7
nTPM
Monaco:
23.6
nTPM
Schmiedel:
28.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.7
HPA sample
nTPM
NK-cell nTPM: 5.7
Samples: 6
Max nTPM: 10.1
Min nTPM: 2.3
P10809_1013
3.8
P10809_1033
7.3
P10809_1052
5.5
P10809_1071
5.0
P10809_1093
2.3
P10809_1103
10.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.6
Monaco sample
nTPM
NK-cell nTPM: 23.6
Samples: 4
Max nTPM: 29.6
Min nTPM: 16.7
RHH5316_R3683
22.7
RHH5224_R3596
29.6
RHH5253_R3625
16.7
RHH5282_R3654
25.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.3
Schmiedel sample id
TPM
NK-cell TPM: 28.3
Samples: 90
Max TPM: 40.5
Min TPM: 11.6
NK_1
40.5
NK_2
39.4
NK_3
39.1
NK_4
38.6
NK_5
36.3
NK_6
36.2
NK_7
35.4
NK_8
35.0
NK_9
34.3
NK_10
33.5
NK_11
33.2
NK_12
33.0
NK_13
33.0
NK_14
32.9
NK_15
32.7
NK_16
32.6
NK_17
32.3
NK_18
32.3
NK_19
32.1
NK_20
31.8
NK_21
31.8
NK_22
31.7
NK_23
31.5
NK_24
31.3
NK_25
31.3
NK_26
31.2
NK_27
31.0
NK_28
30.9
NK_29
30.6
NK_30
30.5
NK_31
30.4
NK_32
30.3
NK_33
29.6
NK_34
29.4
NK_35
29.2
NK_36
29.1
NK_37
29.1
NK_38
28.9
NK_39
28.8
NK_40
28.8
NK_41
28.8
NK_42
28.7
NK_43
28.2
NK_44
28.1
NK_45
28.0
NK_46
28.0
NK_47
27.9
NK_48
27.4
NK_49
27.0
NK_50
26.9
NK_51
26.9
NK_52
26.8
NK_53
26.8
NK_54
26.7
NK_55
26.5
NK_56
26.5
NK_57
26.3
NK_58
26.3
NK_59
26.3
NK_60
26.2
NK_61
26.1
NK_62
26.1
NK_63
26.0
NK_64
26.0
NK_65
25.9
NK_66
25.3
NK_67
25.2
NK_68
25.1
NK_69
25.0
NK_70
24.8
NK_71
24.8
NK_72
24.5
NK_73
24.5
NK_74
24.4
NK_75
24.3
NK_76
24.2
NK_77
24.1
NK_78
24.1
NK_79
23.2
NK_80
23.0
NK_81
22.7
NK_82
22.5
NK_83
22.3
NK_84
21.8
NK_85
21.8
NK_86
21.8
NK_87
21.6
NK_88
21.2
NK_89
19.3
NK_90
11.6
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