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BETA
  • SUMMARY

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  • EVOLUTION

  • PCBP4
EVOLUTIONARY RETINA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Eye
Evolutionary methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:363.6 nTPM
GTEx:363.6 nTPM
FANTOM5:350.9 Scaled Tags Per Million
Macaque:483.5 nTPM
Mouse:337.7 nTPM
Rat:334.7 nTPM
Pig:420.4 nTPM
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

363.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 363.6
Samples: 105

Max nTPM: 969.1
Min nTPM: 46.5
Std nTPM: 181.9
Median nTPM:
218_1 71 years, female 969.1
319_1 81 years, male 867.3
163_1 78 years, male 765.9
352_1 62 years, male 729.5
354_1 81 years, female 679.2
349_1 83 years, male 636.8
356_1 87 years, female 607.3
376_1 75 years, female 606.7
386_1 76 years, male 596.1
452_1 88 years, female 582.0
377_1 82 years, female 579.2
379_1 60 years, male 568.4
350_1 84 years, female 561.0
172_1 72 years, female 548.9
320_1 89 years, female 539.1
351_1 91 years, male 536.8
506_1 65 years, male 533.1
322_1 76 years, male 531.9
447_1 81 years, male 531.5
316_1 62 years, male 530.9
318_1 68 years, male 525.4
321_1 62 years, female 525.0
243_1 75 years, male 524.5
503_1 68 years, male 518.4
353_1 82 years, female 516.4
177_1 74 years, male 505.8
406_1 79 years, male 504.0
425_1 59 years, female 498.4
394_1 75 years, female 490.4
6_1 73 years, female 487.5
335_1 73 years, female 473.9
237_1 82 years, male 460.9
229_1 69 years, female 456.1
293_1 68 years, female 430.8
295_1 61 years, female 430.7
286_1 68 years, female 428.1
375_1 74 years, female 424.6
189_1 76 years, male 417.4
348_1 84 years, male 417.1
355_1 70 years, female 415.9
251_1 78 years, male 413.5
292_1 71 years, male 411.0
347_1 72 years, male 408.7
264_1 73 years, female 405.0
317_1 60 years, male 398.9
173_1 67 years, male 392.3
384_1 83 years, male 391.6
480_1 63 years, male 389.4
526_1 61 years, male 384.6
404_1 82 years, female 379.1
389_1 86 years, female 370.0
266_1 85 years, male 359.8
4_1 88 years, female 358.0
405_1 91 years, male 357.2
99_1 64 years, male 351.7
291_1 76 years, male 349.6
517_1 88 years, male 329.1
153_1 70 years, female 318.4
396_1 62 years, male 314.9
468_1 89 years, male 309.4
17_1 71 years, male 294.4
313_1 79 years, female 292.9
2_1 77 years, female 290.8
254_1 77 years, female 290.8
126_1 63 years, male 285.3
265_1 87 years, male 282.9
324_1 76 years, male 273.7
115_1 83 years, male 270.0
246_1 77 years, male 270.0
142_1 61 years, female 269.7
307_1 66 years, female 266.0
109_1 81 years, female 265.4
120_1 70 years, female 264.5
311_1 78 years, male 264.3
518_1 75 years, female 260.3
217_1 76 years, male 256.4
145_1 84 years, male 251.7
117_1 61 years, male 245.6
35_1 74 years, female 238.9
288_1 66 years, female 234.8
137_1 83 years, male 231.8
41_1 94 years, female 229.4
9_1 66 years, female 227.9
18_1 88 years, male 223.9
314_1 67 years, male 218.1
499_1 55 years, female 210.1
139_1 64 years, female 157.7
42_1 85 years, male 154.5
162_1 79 years, female 153.2
315_1 62 years, female 147.8
81_1 67 years, male 145.8
415_1 77 years, female 145.4
32_1 67 years, male 144.0
43_1 64 years, female 143.1
495_1 57 years, female 121.4
119_1 70 years, female 116.5
308_1 70 years, female 109.2
466_1 57 years, female 92.5
501_1 88 years, male 90.6
89_1 63 years, male 82.8
414_1 84 years, female 82.5
149_1 88 years, male 79.6
491_1 89 years, female 56.6
490_1 67 years, female 52.5
413_1 59 years, female 46.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

350.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 350.9
FF:10030-101E3 24-65 years, mixed 350.9

RETINA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

483.5
Macaque sample Sample description nTPM
Retina
nTPM: 483.5
Samples: 2

Max nTPM: 598.2
Min nTPM: 368.7
Sample A 368.7
Sample B 598.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

420.4
Pig sample Sample description nTPM
Retina
nTPM: 420.4
Samples: 4

Max nTPM: 549.5
Min nTPM: 321.9
Sample A Female 423.2
Sample B Female 321.9
Sample C Male 549.5
Sample D Male 386.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

337.7
Mouse sample Sample description nTPM
Retina
nTPM: 337.7
Samples: 3

Max nTPM: 367.5
Min nTPM: 291.2
Sample D 367.5
Sample B 354.5
Sample C 291.2

RETINA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

334.7
Rat sample Sample description nTPM
Retina
nTPM: 334.7
Samples: 4

Max nTPM: 365.4
Min nTPM: 321.3
Sample B 321.3
Sample A 330.1
Sample A 365.4
Sample A 322.0

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