HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:93.8 nTPM
HPA Brain:98.1 nTPM
GTEx:93.8 nTPM
FANTOM5:72.7 Scaled Tags Per Million
Pig:75.5 nTPM
Mouse:88.6 nTPM
Allen mouse:15.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 98.1
Sample id Sample description nTPM
Hippocampus
nTPM: 70.8
2529 Female, age 94, left hemisphere 90.6
1911 Female, age 85, right hemisphere 83.8
2621 Female, age 67, right hemisphere 70.5
1898 Male, age 80, left hemisphere 63.1
2148 Female, age 91, left hemisphere 61.2
1855 Male, age 76, left hemisphere 55.7
Dentate gyrus
nTPM: 64.2
2528 Male, age 74, both hemispheres 78.3
2530 Female, age 94, left hemisphere 71.9
2010 Male, age 76, both hemispheres 65.4
2246 Female, age 85, both hemispheres 64.4
2531 Female, age 67, both hemispheres 55.2
1927 Female, age 91, both hemispheres 50.3
Entorhinal gyrus
nTPM: 93.7
2117 Female, age 91, right hemisphere 122.1
2764 Male, age 80, right hemisphere 101.1
2613 Female, age 94, left hemisphere 99.6
2686 Male, age 75, right hemisphere 96.3
1787 Male, age 76, left hemisphere 71.9
1938 Female, age 85, left hemisphere 71.5
Hippocampus, CA1
nTPM: 59.7
2527 Male, age 74, both hemispheres 74.6
2082 Female, age 91, right hemisphere 73.5
1873 Female, age 85, both hemispheres 63.3
2749 Male, age 80, left hemisphere 49.8
2045 Male, age 76, both hemispheres 37.2
Hippocampus, CA2
nTPM: 72.1
2249 Male, age 74, both hemispheres 86.2
2437 Female, age 94, left hemisphere 78.3
1963 Male, age 80, left hemisphere 77.0
2113 Female, age 91, right hemisphere 74.5
1940 Female, age 85, left hemisphere 70.7
1892 Male, age 76, both hemispheres 45.7
Hippocampus, CA3
nTPM: 64.7
1891 Female, age 85, both hemispheres 91.4
2436 Male, age 74, both hemispheres 81.4
1867 Male, age 76, both hemispheres 67.4
2620 Female, age 94, left hemisphere 52.0
2861 Female, age 67, both hemispheres 49.9
2137 Male, age 80, left hemisphere 46.3
Parahippocampal cortex
nTPM: 80.3
2692 Male, age 74, both hemispheres 104.9
2622 Female, age 67, right hemisphere 89.8
2532 Female, age 72, left hemisphere 86.3
1990 Female, age 91, right hemisphere 85.6
2693 Female, age 94, both hemispheres 78.6
2018 Male, age 76, both hemispheres 78.1
1850 Male, age 80, both hemispheres 74.6
2245 Female, age 91, both hemispheres 73.2
1933 Female, age 85, both hemispheres 70.3
2250 Female, age 67, right hemisphere 62.0
Perirhinal gyrus
nTPM: 65.1
2848 Male, age 76, right hemisphere 72.8
1794 Male, age 80, right hemisphere 70.7
1847 Female, age 91, left hemisphere 63.0
2521 Female, age 94, right hemisphere 62.1
1841 Female, age 85, right hemisphere 57.0
Subiculum
nTPM: 98.1
2042 Male, age 76, both hemispheres 112.7
2438 Female, age 94, left hemisphere 104.7
1901 Male, age 80, both hemispheres 103.0
2619 Male, age 74, both hemispheres 102.8
1977 Female, age 85, both hemispheres 87.6
2729 Female, age 91, right hemisphere 78.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 93.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 93.8
Samples: 255

Max nTPM: 366.7
Min nTPM: 35.4
Std nTPM: 36.8
Median nTPM: 87.7
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 366.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 295.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 219.1
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 190.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 183.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 180.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 164.7
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 163.7
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 162.4
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 158.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 154.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 72.7
FF:10153-102I9 76 years, female 85.2
FF:10169-103B7 60 years, female 60.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 75.5
Pig sample Sample description nTPM
Subiculum
nTPM: 49.9
Samples: 4

Max nTPM: 57.5
Min nTPM: 45.4
Sample A Female 57.5
Sample B Female 49.8
Sample C Male 46.9
Sample D Male 45.4
Dorsal hippocampus
nTPM: 75.5
Samples: 4

Max nTPM: 108.9
Min nTPM: 39.7
Sample A Female 97.9
Sample B Female 55.5
Sample C Male 108.9
Sample D Male 39.7
Entorhinal cortex
nTPM: 50.3
Samples: 4

Max nTPM: 56.4
Min nTPM: 47.2
Sample A Female 47.2
Sample B Female 56.4
Sample C Male 48.4
Sample D Male 49.0
Ventral hippocampus
nTPM: 58.3
Samples: 4

Max nTPM: 68.7
Min nTPM: 41.3
Sample A Female 59.3
Sample B Female 41.3
Sample C Male 63.9
Sample D Male 68.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 88.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 88.6
Samples: 4

Max nTPM: 99.3
Min nTPM: 74.5
Sample A Male 99.3
Sample B Male 94.7
Sample C Female 86.0
Sample D Female 74.5
Hippocampal formation
nTPM: 82.7
Samples: 4

Max nTPM: 89.6
Min nTPM: 76.8
Sample A Male 82.9
Sample B Male 81.4
Sample C Female 76.8
Sample D Female 89.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 15.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.7
67936208 Antisense, RP_040928_01_A08, Mouse strain C57BL/6J (56 days, male) 15.7
68196977 Antisense, RP_040928_01_A08, Mouse strain C57BL/6J (56 days, male) 6.1

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