On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
415.3
nTPM
HPA Brain:
73.1
nTPM
GTEx:
415.3
nTPM
FANTOM5:
727.0
Scaled Tags Per Million
Macaque:
45.7
nTPM
Mouse:
0.0
nTPM
Rat:
0.3
nTPM
Pig:
101.6
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
ND
Sample
Intensity
Spinal cord_01
ND
Spinal cord_02
ND
Spinal cord_03
ND
Spinal cord_04
ND
Spinal cord_05
ND
Spinal cord_06
ND
Spinal cord_07
ND
Spinal cord_08
ND
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
73.1
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 41.5
2818
Female, age 79, both hemispheres
70.1
2193
Male, age 75, both hemispheres
50.8
2819
Male, age 47, both hemispheres
23.8
2734
Male, age 80, both hemispheres
21.3
Cervical spinal cord, central gray nTPM: 25.6
1981
Female, age 72, midline
44.8
2194
Female, age 79, both hemispheres
25.7
2048
Male, age 55, midline
22.6
2816
Male, age 47, midline
18.3
2565
Male, age 75, midline
16.5
Cervical spinal cord, dorsal horn nTPM: 30.2
2069
Male, age 47, both hemispheres
64.3
2173
Female, age 72, unknown
45.1
2721
Male, age 90, both hemispheres
21.9
2296
Male, age 66, both hemispheres
21.1
1877
Male, age 55, unknown
19.1
2297
Male, age 75, both hemispheres
9.7
Cervical spinal cord, ventral horn nTPM: 37.7
2098
Female, age 72, unknown
149.2
2295
Male, age 66, both hemispheres
28.5
2809
Male, age 90, both hemispheres
19.0
2820
Female, age 79, both hemispheres
12.0
2480
Male, age 75, both hemispheres
8.7
2068
Male, age 55, unknown
8.6
Dorsal funiculus (white matter) nTPM: 47.0
2128
Male, age 75, both hemispheres
74.5
2810
Male, age 90, both hemispheres
50.7
2064
Female, age 79, both hemispheres
40.8
2817
Male, age 47, both hemispheres
35.4
2812
Male, age 66, both hemispheres
33.4
Lateral funiculus (white matter) nTPM: 73.1
2192
Male, age 75, both hemispheres
87.7
2294
Male, age 66, both hemispheres
83.1
2099
Male, age 90, both hemispheres
78.4
2094
Female, age 79, both hemispheres
43.4
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
415.3
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 415.3
Samples: 204
Max nTPM: 2143.4
Min nTPM: 8.4
Std nTPM: 362.5
Median nTPM: 322.5
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
2143.4
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
1560.4
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
1497.0
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
1463.9
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
1411.3
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
1391.8
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
1389.3
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
1265.4
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
1245.3
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
1239.3
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
1211.1
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
1117.0
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
1111.0
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
1093.9
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
1080.0
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
1041.8
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
994.8
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
981.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
970.5
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
966.4
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
911.4
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
882.9
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
844.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
840.7
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
826.0
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
806.1
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
794.0
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
750.0
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
745.3
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
740.0
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
727.8
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
726.3
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
724.7
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
716.8
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
689.5
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
687.1
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
680.6
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
675.7
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
668.1
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
661.0
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
659.9
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
648.6
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
648.4
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
648.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
625.4
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
622.0
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
586.9
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
586.7
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
586.0
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
585.4
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
580.4
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
578.1
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
566.0
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
559.9
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
553.6
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
549.6
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
536.3
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
536.1
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
524.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
514.8
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
510.7
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
503.4
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
500.2
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
494.9
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
492.1
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
487.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
475.7
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
473.8
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
471.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
458.6
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
458.4
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
451.4
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
447.7
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
447.1
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
442.3
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
442.2
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
439.8
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
438.8
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
435.7
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
434.0
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
434.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
416.9
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
409.2
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
405.3
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
405.0
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
393.2
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
386.5
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
382.6
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
367.1
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
363.7
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
360.4
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
359.6
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
351.1
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
348.5
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
346.6
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
342.5
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
335.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
335.0
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
331.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
330.5
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
325.7
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
322.7
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
322.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
318.3
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
316.6
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
311.1
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
311.0
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
302.8
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
297.3
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
296.6
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
290.2
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
290.0
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
276.1
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
273.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
273.8
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
266.6
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
260.2
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
258.8
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
258.5
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
257.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
247.6
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
244.4
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
241.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
236.8
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
236.2
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
229.3
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
228.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
212.9
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
212.2
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
206.1
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
204.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
204.3
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
202.8
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
198.8
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
197.4
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
193.1
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
193.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
186.8
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
184.2
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
176.7
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
170.8
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
169.5
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
168.6
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
166.5
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
166.3
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
162.2
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
160.6
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
156.3
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
155.9
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
154.3
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
153.5
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
151.9
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
147.4
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
143.2
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
137.7
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
135.0
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
134.7
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
134.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
133.0
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
132.8
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
128.2
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
120.7
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
114.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
113.1
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
109.2
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
108.3
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
104.4
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
101.9
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
98.7
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
96.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
94.4
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
93.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
91.1
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
85.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
84.4
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
84.0
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
80.3
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
75.7
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
74.3
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
71.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
71.1
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
70.3
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
68.0
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
66.6
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
60.8
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
60.8
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
59.5
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
56.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
52.9
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
50.5
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
45.8
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
41.9
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
41.6
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
36.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
34.6
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
33.5
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
30.3
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
30.1
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
26.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
18.2
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
15.5
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
11.7
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
10.9
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
8.4
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
45.7
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 38.0
Samples: 2
Max nTPM: 55.8
Min nTPM: 20.1
Sample A
55.8
Sample B
20.1
Ventral spinal cord nTPM: 45.7
Samples: 1
Max nTPM: 45.7
Min nTPM: 45.7
Sample A
45.7
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
101.6
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 101.7
Samples: 4
Max nTPM: 163.0
Min nTPM: 15.6
Sample A
Female
15.6
Sample B
Female
154.5
Sample C
Male
163.0
Sample D
Male
73.5
Ventral spinal cord nTPM: 56.4
Samples: 4
Max nTPM: 76.3
Min nTPM: 18.0
Sample A
Female
18.0
Sample B
Female
76.3
Sample C
Male
65.4
Sample D
Male
65.9
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
0.0
Sample B
0.0
Sample C
0.0
Sample D
0.0
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.3
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 0.3
Samples: 4
Max nTPM: 0.6
Min nTPM: 0.1
Sample A
0.3
Sample A
0.2
Sample A
0.1
Sample A
0.6
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The Human Protein Atlas project is funded
