A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.9
nTPM
Monaco:
23.4
nTPM
Schmiedel:
88.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.9
HPA sample
nTPM
Memory B-cell nTPM: 3.3
Samples: 6
Max nTPM: 5.4
Min nTPM: 0.0
P10809_1017
4.4
P10809_1025
4.6
P10809_1044
0.0
P10809_1063
1.7
P10809_1092
3.5
P10809_1105
5.4
Naive B-cell nTPM: 3.9
Samples: 6
Max nTPM: 6.3
Min nTPM: 0.7
P10809_1011
3.7
P10809_1029
2.8
P10809_1048
0.7
P10809_1067
5.1
P10809_1091
6.3
P10809_1104
4.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 17.9
Samples: 4
Max nTPM: 23.7
Min nTPM: 11.7
RHH5310_R3677
14.0
RHH5218_R3590
22.2
RHH5247_R3619
23.7
RHH5276_R3648
11.7
Naive B-cell nTPM: 22.9
Samples: 4
Max nTPM: 32.2
Min nTPM: 15.5
RHH5308_R3675
32.2
RHH5216_R3588
24.5
RHH5245_R3617
15.5
RHH5274_R3646
19.5
Non-switched memory B-cell nTPM: 23.4
Samples: 4
Max nTPM: 29.7
Min nTPM: 16.6
RHH5309_R3676
24.8
RHH5217_R3589
29.7
RHH5246_R3618
16.6
RHH5275_R3647
22.4
Plasmablast nTPM: 14.0
Samples: 4
Max nTPM: 22.0
Min nTPM: 9.0
RHH5312_R3679
12.3
RHH5220_R3592
12.5
RHH5249_R3621
22.0
RHH5278_R3650
9.0
Switched memory B-cell nTPM: 19.8
Samples: 4
Max nTPM: 31.1
Min nTPM: 9.3
RHH5311_R3678
20.7
RHH5219_R3591
31.1
RHH5248_R3620
9.3
RHH5277_R3649
18.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.8
Schmiedel sample id
TPM
Naive B-cell TPM: 88.8
Samples: 91
Max TPM: 145.8
Min TPM: 35.9
B_CELL_NAIVE_1
145.8
B_CELL_NAIVE_2
145.5
B_CELL_NAIVE_3
131.7
B_CELL_NAIVE_4
131.3
B_CELL_NAIVE_5
130.7
B_CELL_NAIVE_6
129.3
B_CELL_NAIVE_7
128.7
B_CELL_NAIVE_8
125.6
B_CELL_NAIVE_9
123.2
B_CELL_NAIVE_10
122.6
B_CELL_NAIVE_11
120.5
B_CELL_NAIVE_12
119.7
B_CELL_NAIVE_13
118.3
B_CELL_NAIVE_14
115.7
B_CELL_NAIVE_15
113.3
B_CELL_NAIVE_16
112.1
B_CELL_NAIVE_17
111.7
B_CELL_NAIVE_18
110.1
B_CELL_NAIVE_19
109.1
B_CELL_NAIVE_20
108.7
B_CELL_NAIVE_21
108.2
B_CELL_NAIVE_22
107.8
B_CELL_NAIVE_23
107.4
B_CELL_NAIVE_24
107.4
B_CELL_NAIVE_25
106.8
B_CELL_NAIVE_26
103.9
B_CELL_NAIVE_27
103.1
B_CELL_NAIVE_28
103.0
B_CELL_NAIVE_29
102.3
B_CELL_NAIVE_30
102.2
B_CELL_NAIVE_31
101.5
B_CELL_NAIVE_32
101.5
B_CELL_NAIVE_33
100.6
B_CELL_NAIVE_34
99.8
B_CELL_NAIVE_35
98.7
B_CELL_NAIVE_36
98.1
B_CELL_NAIVE_37
93.7
B_CELL_NAIVE_38
93.3
B_CELL_NAIVE_39
92.7
B_CELL_NAIVE_40
92.5
B_CELL_NAIVE_41
91.9
B_CELL_NAIVE_42
90.1
B_CELL_NAIVE_43
89.1
B_CELL_NAIVE_44
88.0
B_CELL_NAIVE_45
87.5
B_CELL_NAIVE_46
87.0
B_CELL_NAIVE_47
86.5
B_CELL_NAIVE_48
85.1
B_CELL_NAIVE_49
84.9
B_CELL_NAIVE_50
84.0
B_CELL_NAIVE_51
83.9
B_CELL_NAIVE_52
83.3
B_CELL_NAIVE_53
82.3
B_CELL_NAIVE_54
81.3
B_CELL_NAIVE_55
80.1
B_CELL_NAIVE_56
80.0
B_CELL_NAIVE_57
79.6
B_CELL_NAIVE_58
79.1
B_CELL_NAIVE_59
78.5
B_CELL_NAIVE_60
78.4
B_CELL_NAIVE_61
78.3
B_CELL_NAIVE_62
77.4
B_CELL_NAIVE_63
77.0
B_CELL_NAIVE_64
75.1
B_CELL_NAIVE_65
74.3
B_CELL_NAIVE_66
73.7
B_CELL_NAIVE_67
73.5
B_CELL_NAIVE_68
73.3
B_CELL_NAIVE_69
73.1
B_CELL_NAIVE_70
71.9
B_CELL_NAIVE_71
71.7
B_CELL_NAIVE_72
69.6
B_CELL_NAIVE_73
69.2
B_CELL_NAIVE_74
66.5
B_CELL_NAIVE_75
65.8
B_CELL_NAIVE_76
64.6
B_CELL_NAIVE_77
62.5
B_CELL_NAIVE_78
57.7
B_CELL_NAIVE_79
56.8
B_CELL_NAIVE_80
56.5
B_CELL_NAIVE_81
56.5
B_CELL_NAIVE_82
56.4
B_CELL_NAIVE_83
56.2
B_CELL_NAIVE_84
56.1
B_CELL_NAIVE_85
54.1
B_CELL_NAIVE_86
49.4
B_CELL_NAIVE_87
45.5
B_CELL_NAIVE_88
43.7
B_CELL_NAIVE_89
42.7
B_CELL_NAIVE_90
39.9
B_CELL_NAIVE_91
35.9
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
