A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.3
nTPM
Monaco:
16.1
nTPM
Schmiedel:
60.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.3
HPA sample
nTPM
Classical monocyte nTPM: 3.3
Samples: 6
Max nTPM: 4.5
Min nTPM: 2.3
P10809_1003
2.4
P10809_1020
3.2
P10809_1039
4.5
P10809_1058
2.3
P10809_1080
2.9
P10809_1107
4.3
Intermediate monocyte nTPM: 1.5
Samples: 6
Max nTPM: 3.0
Min nTPM: 0.2
P10809_1004
1.5
P10809_1023
0.2
P10809_1042
0.7
P10809_1061
2.3
P10809_1081
1.4
P10809_1108
3.0
Non-classical monocyte nTPM: 1.3
Samples: 5
Max nTPM: 2.6
Min nTPM: 0.0
P10809_1005
0.8
P10809_1053
2.0
P10809_1072
0.0
P10809_1082
2.6
P10809_1109
1.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.1
Monaco sample
nTPM
Classical monocyte nTPM: 16.2
Samples: 4
Max nTPM: 22.9
Min nTPM: 4.9
RHH5313_R3680
22.9
RHH5221_R3593
4.9
RHH5250_R3622
17.3
RHH5279_R3651
19.5
Intermediate monocyte nTPM: 13.6
Samples: 4
Max nTPM: 22.4
Min nTPM: 7.2
RHH5314_R3681
22.4
RHH5222_R3594
7.2
RHH5251_R3623
15.0
RHH5280_R3652
9.7
Non-classical monocyte nTPM: 7.0
Samples: 4
Max nTPM: 13.9
Min nTPM: 0.6
RHH5315_R3682
8.3
RHH5223_R3595
0.6
RHH5252_R3624
5.2
RHH5281_R3653
13.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.5
Schmiedel sample id
TPM
Classical monocyte TPM: 60.5
Samples: 91
Max TPM: 109.5
Min TPM: 30.7
MONOCYTES_1
109.5
MONOCYTES_2
96.5
MONOCYTES_3
95.0
MONOCYTES_4
92.6
MONOCYTES_5
90.1
MONOCYTES_6
88.3
MONOCYTES_7
86.5
MONOCYTES_8
84.7
MONOCYTES_9
82.8
MONOCYTES_10
81.8
MONOCYTES_11
80.9
MONOCYTES_12
79.9
MONOCYTES_13
79.6
MONOCYTES_14
79.2
MONOCYTES_15
78.9
MONOCYTES_16
78.3
MONOCYTES_17
75.3
MONOCYTES_18
74.4
MONOCYTES_19
73.8
MONOCYTES_20
73.8
MONOCYTES_21
72.6
MONOCYTES_22
72.0
MONOCYTES_23
71.6
MONOCYTES_24
69.8
MONOCYTES_25
69.4
MONOCYTES_26
68.8
MONOCYTES_27
68.3
MONOCYTES_28
67.6
MONOCYTES_29
66.7
MONOCYTES_30
66.2
MONOCYTES_31
65.4
MONOCYTES_32
64.8
MONOCYTES_33
63.6
MONOCYTES_34
63.6
MONOCYTES_35
63.4
MONOCYTES_36
62.9
MONOCYTES_37
62.0
MONOCYTES_38
61.4
MONOCYTES_39
60.9
MONOCYTES_40
60.6
MONOCYTES_41
60.4
MONOCYTES_42
59.2
MONOCYTES_43
58.6
MONOCYTES_44
58.6
MONOCYTES_45
58.3
MONOCYTES_46
58.2
MONOCYTES_47
56.9
MONOCYTES_48
56.7
MONOCYTES_49
56.3
MONOCYTES_50
56.0
MONOCYTES_51
55.9
MONOCYTES_52
55.8
MONOCYTES_53
55.6
MONOCYTES_54
55.4
MONOCYTES_55
55.1
MONOCYTES_56
55.1
MONOCYTES_57
55.0
MONOCYTES_58
54.8
MONOCYTES_59
54.2
MONOCYTES_60
54.1
MONOCYTES_61
53.4
MONOCYTES_62
52.9
MONOCYTES_63
52.6
MONOCYTES_64
52.5
MONOCYTES_65
52.4
MONOCYTES_66
52.2
MONOCYTES_67
51.6
MONOCYTES_68
51.5
MONOCYTES_69
51.2
MONOCYTES_70
49.7
MONOCYTES_71
49.7
MONOCYTES_72
49.2
MONOCYTES_73
48.0
MONOCYTES_74
47.9
MONOCYTES_75
46.9
MONOCYTES_76
46.5
MONOCYTES_77
44.3
MONOCYTES_78
43.5
MONOCYTES_79
42.1
MONOCYTES_80
41.0
MONOCYTES_81
39.7
MONOCYTES_82
38.8
MONOCYTES_83
38.4
MONOCYTES_84
37.8
MONOCYTES_85
37.0
MONOCYTES_86
36.9
MONOCYTES_87
35.9
MONOCYTES_88
35.2
MONOCYTES_89
34.7
MONOCYTES_90
31.8
MONOCYTES_91
30.7
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Non-classical monocyte TPM: 30.1
Samples: 90
Max TPM: 56.3
Min TPM: 9.5
M2_1
56.3
M2_2
53.7
M2_3
51.0
M2_4
49.7
M2_5
49.6
M2_6
49.5
M2_7
47.9
M2_8
46.9
M2_9
46.1
M2_10
45.8
M2_11
45.2
M2_12
45.1
M2_13
44.3
M2_14
44.3
M2_15
43.3
M2_16
43.1
M2_17
42.3
M2_18
41.5
M2_19
41.4
M2_20
40.0
M2_21
39.6
M2_22
39.5
M2_23
38.7
M2_24
37.1
M2_25
36.0
M2_26
35.5
M2_27
35.5
M2_28
34.5
M2_29
33.7
M2_30
33.5
M2_31
33.4
M2_32
33.1
M2_33
32.1
M2_34
32.1
M2_35
31.7
M2_36
31.5
M2_37
31.4
M2_38
31.1
M2_39
30.9
M2_40
30.7
M2_41
30.1
M2_42
29.2
M2_43
29.2
M2_44
28.9
M2_45
28.9
M2_46
28.6
M2_47
27.7
M2_48
27.5
M2_49
27.4
M2_50
27.4
M2_51
27.0
M2_52
26.6
M2_53
26.1
M2_54
26.0
M2_55
25.3
M2_56
25.1
M2_57
25.0
M2_58
24.7
M2_59
24.6
M2_60
24.4
M2_61
24.2
M2_62
23.7
M2_63
23.5
M2_64
23.4
M2_65
23.1
M2_66
22.7
M2_67
22.1
M2_68
22.0
M2_69
21.4
M2_70
21.4
M2_71
20.6
M2_72
20.1
M2_73
19.5
M2_74
19.2
M2_75
19.1
M2_76
18.7
M2_77
18.5
M2_78
18.5
M2_79
18.1
M2_80
17.4
M2_81
17.2
M2_82
16.9
M2_83
16.1
M2_84
15.3
M2_85
14.9
M2_86
14.6
M2_87
14.4
M2_88
14.3
M2_89
13.0
M2_90
9.5
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