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  • NDUFB2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:380.0 nTPM
HPA Brain:146.2 nTPM
GTEx:380.0 nTPM
FANTOM5:56.7 Scaled Tags Per Million
Pig:34.1 nTPM
Mouse:127.1 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.2
Sample id Sample description nTPM
Amygdala
nTPM: 146.2
2814 Male, age 76, right hemisphere 181.1
2695 Female, age 67, right hemisphere 152.2
2514 Male, age 75, right hemisphere 139.6
2517 Female, age 94, left hemisphere 131.0
1987 Female, age 91, left hemisphere 127.0
Basal amygdala
nTPM: 111.4
2110 Male, age 80, left hemisphere 125.1
2609 Male, age 75, right hemisphere 124.2
2685 Female, age 94, left hemisphere 114.6
1955 Male, age 76, both hemispheres 111.4
2827 Female, age 67, right hemisphere 102.3
2243 Female, age 91, right hemisphere 90.8
Central amygdala
nTPM: 137.1
2826 Female, age 94, left hemisphere 176.2
1905 Male, age 76, both hemispheres 170.4
2515 Male, age 75, right hemisphere 136.3
2239 Male, age 80, left hemisphere 107.5
2701 Female, age 91, right hemisphere 95.3
Corticomedial amygdala
nTPM: 109.1
2428 Male, age 75, right hemisphere 144.3
2829 Male, age 80, left hemisphere 119.7
2429 Female, age 94, left hemisphere 107.7
2240 Male, age 76, both hemispheres 101.0
2242 Female, age 91, right hemisphere 92.7
2535 Female, age 67, right hemisphere 89.1
Lateral amygdala
nTPM: 126.9
2534 Female, age 94, left hemisphere 163.0
1883 Male, age 76, both hemispheres 155.2
2516 Male, age 75, right hemisphere 150.4
2830 Female, age 67, right hemisphere 111.4
2256 Male, age 80, left hemisphere 91.0
2255 Female, age 91, right hemisphere 90.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

380.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 380.0
Samples: 181

Max nTPM: 1672.3
Min nTPM: 201.0
Std nTPM: 156.4
Median nTPM: 347.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1672.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 990.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 926.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 843.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 752.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 710.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 701.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 686.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 597.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 595.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 591.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 585.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 563.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 562.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 558.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 542.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 529.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 521.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 518.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 517.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 517.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 514.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 506.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 499.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 494.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 484.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 482.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 480.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 468.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 466.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 464.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 451.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 446.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 445.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 444.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 442.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 441.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 434.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 433.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 430.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 429.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 425.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 423.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 419.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 418.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 413.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 413.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 411.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 409.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 408.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 404.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 404.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 402.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 399.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 397.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 396.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 393.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 390.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 387.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 384.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 382.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 380.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 379.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 378.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 377.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 376.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 375.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 374.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 373.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 373.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 370.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 370.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 368.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 367.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 365.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 362.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 362.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 362.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 360.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 360.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 359.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 358.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 357.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 355.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 353.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 351.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 350.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 350.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 349.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 348.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 347.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 347.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 347.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 343.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 343.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 342.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 337.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 335.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 334.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 334.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 334.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 334.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 334.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 329.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 327.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 323.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 323.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 322.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 322.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 321.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 321.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 321.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 316.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 315.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 315.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 313.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 313.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 310.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 310.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 309.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 309.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 308.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 308.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 305.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 304.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 303.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 301.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 300.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 299.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 295.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 294.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 294.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 291.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 291.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 288.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 287.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 286.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 284.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 284.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 283.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 282.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 281.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 281.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 280.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 279.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 279.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 279.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 278.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 277.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 275.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 275.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 275.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 273.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 270.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 270.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 267.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 266.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 264.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 263.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 261.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 260.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 259.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 258.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 258.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 258.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 257.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 257.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 257.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 255.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 247.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 246.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 246.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 245.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 244.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 243.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 242.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 237.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 227.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 215.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 213.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 201.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

56.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 56.7
FF:10151-102I7 76 years, female 56.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.1
Pig sample Sample description nTPM
Amygdala
nTPM: 34.1
Samples: 4

Max nTPM: 35.9
Min nTPM: 31.8
Sample A Female 31.8
Sample B Female 34.6
Sample C Male 34.2
Sample D Male 35.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 127.1
Samples: 4

Max nTPM: 167.7
Min nTPM: 103.9
Sample A Male 130.9
Sample B Male 105.9
Sample C Female 167.7
Sample D Female 103.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.8
70429309 Antisense, RP_050614_01_D09, Mouse strain C57BL/6J (56 days, male) 0.8

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