MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:403.8 nTPM
HPA Brain:161.5 nTPM
GTEx:403.8 nTPM
FANTOM5:69.2 Scaled Tags Per Million
Pig:38.5 nTPM
Mouse:66.6 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 161.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 141.5
2019 Male, age 18, unknown 197.9
2411 Female, age 72, unknown 158.5
1827 Male, age 72, unknown 155.9
1870 Female, age 42, unknown 145.0
2828 Female, age 72, unknown 140.0
2586 Male, age 75, left hemisphere 138.5
2666 Male, age 74, left hemisphere 127.1
2219 Male, age 76, both hemispheres 120.8
1833 Male, age 53, unknown 116.2
1830 Male, age 51, unknown 115.2
Dorsal raphe nucleus
nTPM: 146.5
2298 Female, age 72, unknown 185.5
2750 Male, age 76, both hemispheres 146.3
1828 Male, age 53, unknown 145.4
2047 Male, age 72, unknown 132.9
2016 Female, age 72, unknown 122.1
Inferior colliculus
nTPM: 143.0
2097 Female, age 72, unknown 185.1
1890 Male, age 53, unknown 167.4
1848 Female, age 42, unknown 120.0
2849 Male, age 72, unknown 99.4
Median raphe nucleus
nTPM: 126.6
2220 Male, age 76, midline 126.6
Periaquaductal grey, anterior
nTPM: 141.8
2502 Female, age 75, unknown 147.5
1947 Male, age 18, unknown 145.7
1795 Male, age 51, unknown 132.2
Periaquaductal grey, dorsal
nTPM: 116.0
1831 Male, age 72, unknown 123.3
1840 Male, age 53, unknown 121.3
2464 Female, age 72, unknown 119.1
2850 Male, age 76, both hemispheres 100.4
Periaquaductal grey, lateral
nTPM: 108.5
2053 Male, age 18, unknown 112.0
2272 Male, age 74, both hemispheres 108.8
2140 Male, age 76, both hemispheres 104.5
Pretectal area
nTPM: 160.2
2007 Male, age 72, unknown 225.7
1816 Male, age 51, unknown 203.2
1817 Female, age 42, unknown 191.7
1944 Female, age 72, unknown 181.2
1815 Male, age 53, unknown 169.4
2667 Female, age 75, unknown 158.9
2316 Male, age 76, right hemisphere 135.3
2224 Female, age 72, unknown 134.2
2273 Male, age 74, both hemispheres 132.8
2825 Male, age 18, unknown 117.7
2407 Male, age 75, both hemispheres 111.8
Red nucleus
nTPM: 161.5
1821 Female, age 72, unknown 199.5
2503 Female, age 72, unknown 183.6
2785 Male, age 18, unknown 180.6
1865 Male, age 51, unknown 169.7
1904 Male, age 53, unknown 165.8
2823 Male, age 76, right hemisphere 162.8
1954 Female, age 42, unknown 161.2
2769 Male, age 72, unknown 160.6
2227 Male, age 72, unknown 158.6
2725 Female, age 75, unknown 138.5
2588 Male, age 74, left hemisphere 137.5
2584 Male, age 75, left hemisphere 120.2
Substantia nigra
nTPM: 154.7
1916 Female, age 42, unknown 200.0
1851 Male, age 51, unknown 187.3
1889 Female, age 72, unknown 176.9
2665 Male, age 74, both hemispheres 157.4
2241 Male, age 72, unknown 152.3
2409 Female, age 72, unknown 149.6
1941 Male, age 53, unknown 139.5
2583 Male, age 75, right hemisphere 139.1
2590 Female, age 75, unknown 128.7
2699 Male, age 18, unknown 116.3
Superior colliculus
nTPM: 144.7
2668 Female, age 75, unknown 185.8
2087 Female, age 72, unknown 160.9
1895 Male, age 76, right hemisphere 157.4
1796 Male, age 53, unknown 157.1
2261 Male, age 18, unknown 147.1
2664 Male, age 75, both hemispheres 132.6
2587 Male, age 74, left hemisphere 132.5
1913 Female, age 42, unknown 131.6
1995 Male, age 72, unknown 128.2
1839 Male, age 51, unknown 113.8
Ventral tegmental area
nTPM: 144.0
1915 Female, age 42, unknown 170.4
2410 Female, age 72, unknown 159.7
2218 Male, age 76, both hemispheres 143.3
1942 Male, age 51, unknown 138.5
2223 Female, age 72, unknown 131.6
2021 Male, age 53, unknown 120.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 403.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 403.8
Samples: 183

Max nTPM: 877.9
Min nTPM: 190.8
Std nTPM: 104.3
Median nTPM: 388.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 877.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 726.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 703.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 687.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 658.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 616.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 614.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 605.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 594.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 592.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 587.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.2
FF:10158-103A5 76 years, female 69.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.4
Samples: 4

Max nTPM: 40.1
Min nTPM: 30.5
Sample A Female 40.1
Sample B Female 30.5
Sample C Male 30.6
Sample D Male 36.4
Midbrain
nTPM: 34.8
Samples: 4

Max nTPM: 38.9
Min nTPM: 28.8
Sample A Female 28.8
Sample B Female 34.6
Sample C Male 36.8
Sample D Male 38.9
Periaqueductal gray
nTPM: 33.0
Samples: 3

Max nTPM: 34.0
Min nTPM: 31.6
Sample B Female 34.0
Sample C Male 31.6
Sample D Male 33.4
Superior colliculi
nTPM: 38.5
Samples: 4

Max nTPM: 44.2
Min nTPM: 32.8
Sample A Female 39.7
Sample B Female 37.4
Sample C Male 44.2
Sample D Male 32.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 66.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.6
Samples: 4

Max nTPM: 72.2
Min nTPM: 60.1
Sample A Male 66.7
Sample B Male 67.4
Sample C Female 60.1
Sample D Female 72.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
70429309 Antisense, RP_050614_01_D09, Mouse strain C57BL/6J (56 days, male) 1.0

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