A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
186.9
nTPM
Monaco:
144.3
nTPM
Schmiedel:
45.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
186.9
HPA sample
nTPM
Memory B-cell nTPM: 177.4
Samples: 6
Max nTPM: 362.8
Min nTPM: 88.1
P10809_1017
88.1
P10809_1025
170.5
P10809_1044
362.8
P10809_1063
144.4
P10809_1092
151.0
P10809_1105
147.3
Naive B-cell nTPM: 186.9
Samples: 6
Max nTPM: 410.4
Min nTPM: 80.7
P10809_1011
80.7
P10809_1029
178.3
P10809_1048
410.4
P10809_1067
122.0
P10809_1091
161.6
P10809_1104
168.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
144.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 123.9
Samples: 4
Max nTPM: 147.2
Min nTPM: 79.6
RHH5310_R3677
147.2
RHH5218_R3590
122.4
RHH5247_R3619
146.4
RHH5276_R3648
79.6
Naive B-cell nTPM: 111.1
Samples: 4
Max nTPM: 149.2
Min nTPM: 62.0
RHH5308_R3675
124.8
RHH5216_R3588
149.2
RHH5245_R3617
62.0
RHH5274_R3646
108.3
Non-switched memory B-cell nTPM: 131.0
Samples: 4
Max nTPM: 166.4
Min nTPM: 83.0
RHH5309_R3676
120.4
RHH5217_R3589
166.4
RHH5246_R3618
154.3
RHH5275_R3647
83.0
Plasmablast nTPM: 144.3
Samples: 4
Max nTPM: 187.1
Min nTPM: 108.6
RHH5312_R3679
108.6
RHH5220_R3592
187.1
RHH5249_R3621
159.8
RHH5278_R3650
121.7
Switched memory B-cell nTPM: 127.9
Samples: 4
Max nTPM: 149.6
Min nTPM: 103.1
RHH5311_R3678
149.6
RHH5219_R3591
126.1
RHH5248_R3620
132.9
RHH5277_R3649
103.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.6
Schmiedel sample id
TPM
Naive B-cell TPM: 45.6
Samples: 91
Max TPM: 62.4
Min TPM: 25.7
B_CELL_NAIVE_1
62.4
B_CELL_NAIVE_2
55.4
B_CELL_NAIVE_3
55.4
B_CELL_NAIVE_4
55.3
B_CELL_NAIVE_5
55.2
B_CELL_NAIVE_6
54.8
B_CELL_NAIVE_7
54.1
B_CELL_NAIVE_8
53.9
B_CELL_NAIVE_9
53.6
B_CELL_NAIVE_10
53.3
B_CELL_NAIVE_11
53.3
B_CELL_NAIVE_12
53.1
B_CELL_NAIVE_13
53.0
B_CELL_NAIVE_14
53.0
B_CELL_NAIVE_15
52.8
B_CELL_NAIVE_16
52.7
B_CELL_NAIVE_17
52.6
B_CELL_NAIVE_18
52.5
B_CELL_NAIVE_19
52.5
B_CELL_NAIVE_20
52.1
B_CELL_NAIVE_21
52.1
B_CELL_NAIVE_22
51.8
B_CELL_NAIVE_23
51.8
B_CELL_NAIVE_24
51.7
B_CELL_NAIVE_25
51.6
B_CELL_NAIVE_26
51.3
B_CELL_NAIVE_27
51.3
B_CELL_NAIVE_28
50.6
B_CELL_NAIVE_29
50.2
B_CELL_NAIVE_30
50.0
B_CELL_NAIVE_31
49.9
B_CELL_NAIVE_32
49.7
B_CELL_NAIVE_33
49.6
B_CELL_NAIVE_34
49.5
B_CELL_NAIVE_35
49.5
B_CELL_NAIVE_36
49.4
B_CELL_NAIVE_37
49.2
B_CELL_NAIVE_38
48.6
B_CELL_NAIVE_39
47.9
B_CELL_NAIVE_40
47.8
B_CELL_NAIVE_41
47.6
B_CELL_NAIVE_42
47.2
B_CELL_NAIVE_43
47.1
B_CELL_NAIVE_44
46.2
B_CELL_NAIVE_45
46.1
B_CELL_NAIVE_46
46.0
B_CELL_NAIVE_47
45.9
B_CELL_NAIVE_48
45.8
B_CELL_NAIVE_49
45.7
B_CELL_NAIVE_50
45.5
B_CELL_NAIVE_51
45.0
B_CELL_NAIVE_52
45.0
B_CELL_NAIVE_53
44.9
B_CELL_NAIVE_54
44.9
B_CELL_NAIVE_55
44.8
B_CELL_NAIVE_56
44.6
B_CELL_NAIVE_57
44.5
B_CELL_NAIVE_58
44.5
B_CELL_NAIVE_59
43.8
B_CELL_NAIVE_60
43.8
B_CELL_NAIVE_61
43.4
B_CELL_NAIVE_62
43.2
B_CELL_NAIVE_63
42.6
B_CELL_NAIVE_64
42.4
B_CELL_NAIVE_65
42.3
B_CELL_NAIVE_66
42.2
B_CELL_NAIVE_67
42.1
B_CELL_NAIVE_68
41.9
B_CELL_NAIVE_69
41.6
B_CELL_NAIVE_70
41.6
B_CELL_NAIVE_71
41.2
B_CELL_NAIVE_72
40.2
B_CELL_NAIVE_73
40.1
B_CELL_NAIVE_74
39.7
B_CELL_NAIVE_75
39.1
B_CELL_NAIVE_76
38.9
B_CELL_NAIVE_77
38.4
B_CELL_NAIVE_78
37.9
B_CELL_NAIVE_79
37.8
B_CELL_NAIVE_80
37.3
B_CELL_NAIVE_81
37.0
B_CELL_NAIVE_82
34.6
B_CELL_NAIVE_83
33.9
B_CELL_NAIVE_84
33.6
B_CELL_NAIVE_85
32.2
B_CELL_NAIVE_86
31.3
B_CELL_NAIVE_87
30.3
B_CELL_NAIVE_88
27.2
B_CELL_NAIVE_89
27.0
B_CELL_NAIVE_90
26.8
B_CELL_NAIVE_91
25.7
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