A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
155.9
nTPM
Monaco:
110.0
nTPM
Schmiedel:
47.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
155.9
HPA sample
nTPM
Classical monocyte nTPM: 139.0
Samples: 6
Max nTPM: 213.3
Min nTPM: 87.1
P10809_1003
87.1
P10809_1020
147.8
P10809_1039
213.3
P10809_1058
110.8
P10809_1080
115.9
P10809_1107
158.9
Intermediate monocyte nTPM: 150.3
Samples: 6
Max nTPM: 211.0
Min nTPM: 94.6
P10809_1004
94.6
P10809_1023
146.6
P10809_1042
163.9
P10809_1061
211.0
P10809_1081
113.2
P10809_1108
172.4
Non-classical monocyte nTPM: 155.9
Samples: 5
Max nTPM: 267.4
Min nTPM: 98.8
P10809_1005
98.8
P10809_1053
163.6
P10809_1072
267.4
P10809_1082
99.0
P10809_1109
150.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
110.0
Monaco sample
nTPM
Classical monocyte nTPM: 109.2
Samples: 4
Max nTPM: 123.9
Min nTPM: 98.4
RHH5313_R3680
102.0
RHH5221_R3593
98.4
RHH5250_R3622
112.3
RHH5279_R3651
123.9
Intermediate monocyte nTPM: 110.0
Samples: 4
Max nTPM: 140.1
Min nTPM: 88.7
RHH5314_R3681
117.7
RHH5222_R3594
93.6
RHH5251_R3623
88.7
RHH5280_R3652
140.1
Non-classical monocyte nTPM: 97.1
Samples: 4
Max nTPM: 134.4
Min nTPM: 74.5
RHH5315_R3682
91.4
RHH5223_R3595
74.5
RHH5252_R3624
88.2
RHH5281_R3653
134.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.1
Schmiedel sample id
TPM
Classical monocyte TPM: 47.1
Samples: 91
Max TPM: 59.3
Min TPM: 34.7
MONOCYTES_1
59.3
MONOCYTES_2
58.6
MONOCYTES_3
56.3
MONOCYTES_4
55.7
MONOCYTES_5
55.6
MONOCYTES_6
55.2
MONOCYTES_7
55.2
MONOCYTES_8
54.5
MONOCYTES_9
54.1
MONOCYTES_10
53.9
MONOCYTES_11
53.8
MONOCYTES_12
53.6
MONOCYTES_13
53.4
MONOCYTES_14
52.9
MONOCYTES_15
52.6
MONOCYTES_16
52.1
MONOCYTES_17
51.4
MONOCYTES_18
51.3
MONOCYTES_19
51.3
MONOCYTES_20
51.0
MONOCYTES_21
50.9
MONOCYTES_22
50.6
MONOCYTES_23
50.3
MONOCYTES_24
50.2
MONOCYTES_25
50.0
MONOCYTES_26
49.8
MONOCYTES_27
49.8
MONOCYTES_28
49.8
MONOCYTES_29
49.7
MONOCYTES_30
49.6
MONOCYTES_31
49.5
MONOCYTES_32
49.2
MONOCYTES_33
48.7
MONOCYTES_34
48.7
MONOCYTES_35
48.6
MONOCYTES_36
48.5
MONOCYTES_37
48.4
MONOCYTES_38
48.1
MONOCYTES_39
48.0
MONOCYTES_40
47.9
MONOCYTES_41
47.7
MONOCYTES_42
47.7
MONOCYTES_43
47.6
MONOCYTES_44
47.5
MONOCYTES_45
47.3
MONOCYTES_46
47.2
MONOCYTES_47
47.2
MONOCYTES_48
47.1
MONOCYTES_49
47.1
MONOCYTES_50
47.1
MONOCYTES_51
47.0
MONOCYTES_52
46.5
MONOCYTES_53
46.3
MONOCYTES_54
45.3
MONOCYTES_55
45.3
MONOCYTES_56
45.2
MONOCYTES_57
45.2
MONOCYTES_58
45.1
MONOCYTES_59
44.5
MONOCYTES_60
44.3
MONOCYTES_61
44.2
MONOCYTES_62
43.8
MONOCYTES_63
43.8
MONOCYTES_64
43.3
MONOCYTES_65
43.3
MONOCYTES_66
43.2
MONOCYTES_67
43.2
MONOCYTES_68
43.1
MONOCYTES_69
43.1
MONOCYTES_70
43.1
MONOCYTES_71
43.0
MONOCYTES_72
43.0
MONOCYTES_73
42.9
MONOCYTES_74
42.6
MONOCYTES_75
42.6
MONOCYTES_76
42.6
MONOCYTES_77
42.5
MONOCYTES_78
42.3
MONOCYTES_79
41.8
MONOCYTES_80
41.6
MONOCYTES_81
41.5
MONOCYTES_82
40.8
MONOCYTES_83
40.3
MONOCYTES_84
40.0
MONOCYTES_85
40.0
MONOCYTES_86
39.7
MONOCYTES_87
39.7
MONOCYTES_88
38.7
MONOCYTES_89
37.9
MONOCYTES_90
37.4
MONOCYTES_91
34.7
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Non-classical monocyte TPM: 46.7
Samples: 90
Max TPM: 65.0
Min TPM: 27.9
M2_1
65.0
M2_2
62.2
M2_3
59.0
M2_4
57.9
M2_5
57.8
M2_6
57.4
M2_7
57.3
M2_8
56.2
M2_9
56.0
M2_10
55.3
M2_11
55.2
M2_12
54.9
M2_13
54.8
M2_14
54.3
M2_15
54.1
M2_16
53.8
M2_17
53.4
M2_18
53.4
M2_19
53.2
M2_20
53.2
M2_21
53.0
M2_22
52.7
M2_23
52.3
M2_24
52.2
M2_25
51.8
M2_26
51.8
M2_27
51.1
M2_28
50.8
M2_29
50.6
M2_30
50.4
M2_31
50.3
M2_32
50.2
M2_33
49.1
M2_34
49.0
M2_35
48.8
M2_36
48.6
M2_37
48.4
M2_38
48.3
M2_39
48.3
M2_40
48.2
M2_41
47.6
M2_42
47.2
M2_43
47.2
M2_44
46.8
M2_45
46.7
M2_46
46.6
M2_47
46.6
M2_48
46.6
M2_49
46.5
M2_50
46.4
M2_51
46.3
M2_52
46.2
M2_53
45.9
M2_54
45.2
M2_55
45.1
M2_56
44.2
M2_57
44.1
M2_58
44.0
M2_59
43.8
M2_60
43.7
M2_61
43.2
M2_62
43.0
M2_63
42.9
M2_64
42.8
M2_65
42.4
M2_66
42.0
M2_67
41.9
M2_68
41.9
M2_69
41.8
M2_70
41.4
M2_71
41.4
M2_72
40.4
M2_73
40.3
M2_74
40.2
M2_75
39.9
M2_76
39.3
M2_77
38.5
M2_78
38.5
M2_79
38.4
M2_80
38.3
M2_81
37.5
M2_82
37.3
M2_83
35.5
M2_84
35.1
M2_85
34.6
M2_86
34.4
M2_87
32.3
M2_88
31.4
M2_89
31.1
M2_90
27.9
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