MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.7 nTPM
HPA Brain:52.5 nTPM
GTEx:46.7 nTPM
FANTOM5:55.9 Scaled Tags Per Million
Pig:23.0 nTPM
Mouse:29.9 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 52.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.9
2411 Female, age 72, unknown 53.4
2019 Male, age 18, unknown 53.0
1870 Female, age 42, unknown 52.7
1833 Male, age 53, unknown 50.6
2666 Male, age 74, left hemisphere 50.2
1830 Male, age 51, unknown 49.2
2828 Female, age 72, unknown 47.4
1827 Male, age 72, unknown 47.2
2586 Male, age 75, left hemisphere 45.4
2219 Male, age 76, both hemispheres 40.0
Dorsal raphe nucleus
nTPM: 52.0
2016 Female, age 72, unknown 53.0
2298 Female, age 72, unknown 52.8
2750 Male, age 76, both hemispheres 52.7
2047 Male, age 72, unknown 52.4
1828 Male, age 53, unknown 49.0
Inferior colliculus
nTPM: 46.8
2097 Female, age 72, unknown 49.9
1890 Male, age 53, unknown 47.7
1848 Female, age 42, unknown 47.0
2849 Male, age 72, unknown 42.4
Median raphe nucleus
nTPM: 51.9
2220 Male, age 76, midline 51.9
Periaquaductal grey, anterior
nTPM: 44.3
2502 Female, age 75, unknown 45.5
1947 Male, age 18, unknown 44.5
1795 Male, age 51, unknown 43.0
Periaquaductal grey, dorsal
nTPM: 48.1
2464 Female, age 72, unknown 49.3
1840 Male, age 53, unknown 48.7
2850 Male, age 76, both hemispheres 47.3
1831 Male, age 72, unknown 47.2
Periaquaductal grey, lateral
nTPM: 46.3
2053 Male, age 18, unknown 47.7
2140 Male, age 76, both hemispheres 46.4
2272 Male, age 74, both hemispheres 44.7
Pretectal area
nTPM: 46.5
2273 Male, age 74, both hemispheres 51.4
2224 Female, age 72, unknown 50.3
1817 Female, age 42, unknown 49.9
2007 Male, age 72, unknown 48.1
2316 Male, age 76, right hemisphere 47.4
1815 Male, age 53, unknown 46.3
2667 Female, age 75, unknown 46.2
1816 Male, age 51, unknown 44.7
1944 Female, age 72, unknown 43.8
2825 Male, age 18, unknown 42.2
2407 Male, age 75, both hemispheres 40.9
Red nucleus
nTPM: 51.1
1821 Female, age 72, unknown 58.5
1904 Male, age 53, unknown 56.6
1954 Female, age 42, unknown 51.4
2503 Female, age 72, unknown 51.1
2227 Male, age 72, unknown 50.6
2823 Male, age 76, right hemisphere 50.6
2785 Male, age 18, unknown 50.3
1865 Male, age 51, unknown 50.2
2769 Male, age 72, unknown 49.7
2725 Female, age 75, unknown 49.6
2588 Male, age 74, left hemisphere 48.6
2584 Male, age 75, left hemisphere 45.5
Substantia nigra
nTPM: 52.5
2409 Female, age 72, unknown 59.4
1851 Male, age 51, unknown 57.9
2241 Male, age 72, unknown 54.3
1916 Female, age 42, unknown 53.4
2699 Male, age 18, unknown 52.9
2590 Female, age 75, unknown 50.7
2583 Male, age 75, right hemisphere 50.6
2665 Male, age 74, both hemispheres 49.1
1941 Male, age 53, unknown 48.8
1889 Female, age 72, unknown 47.9
Superior colliculus
nTPM: 46.1
1913 Female, age 42, unknown 51.7
1995 Male, age 72, unknown 50.8
2668 Female, age 75, unknown 47.8
1839 Male, age 51, unknown 46.5
2587 Male, age 74, left hemisphere 46.2
1895 Male, age 76, right hemisphere 45.5
2261 Male, age 18, unknown 45.1
2087 Female, age 72, unknown 44.0
1796 Male, age 53, unknown 42.7
2664 Male, age 75, both hemispheres 41.0
Ventral tegmental area
nTPM: 51.6
2021 Male, age 53, unknown 53.0
2410 Female, age 72, unknown 52.8
1915 Female, age 42, unknown 52.7
2223 Female, age 72, unknown 51.8
2218 Male, age 76, both hemispheres 49.7
1942 Male, age 51, unknown 49.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.7
Samples: 183

Max nTPM: 71.8
Min nTPM: 29.8
Std nTPM: 7.3
Median nTPM: 45.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 71.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 70.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 66.6
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 66.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 65.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 64.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 60.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 60.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 60.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 59.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 59.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.9
FF:10158-103A5 76 years, female 55.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.7
Samples: 4

Max nTPM: 25.4
Min nTPM: 18.8
Sample A Female 25.4
Sample B Female 22.8
Sample C Male 18.8
Sample D Male 19.8
Midbrain
nTPM: 23.0
Samples: 4

Max nTPM: 35.7
Min nTPM: 15.9
Sample A Female 35.7
Sample B Female 20.0
Sample C Male 20.4
Sample D Male 15.9
Periaqueductal gray
nTPM: 16.8
Samples: 3

Max nTPM: 18.2
Min nTPM: 15.4
Sample B Female 18.2
Sample C Male 16.8
Sample D Male 15.4
Superior colliculi
nTPM: 23.1
Samples: 4

Max nTPM: 29.1
Min nTPM: 19.0
Sample A Female 23.7
Sample B Female 29.1
Sample C Male 20.4
Sample D Male 19.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.9
Samples: 4

Max nTPM: 32.4
Min nTPM: 26.5
Sample A Male 32.4
Sample B Male 29.8
Sample C Female 30.9
Sample D Female 26.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69885684 Antisense, RP_050512_03_B12, Mouse strain C57BL/6J (56 days, male) 0.7
71717143 Antisense, RP_050512_03_B12, Mouse strain C57BL/6J (56 days, male) 0.6

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