On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
46.7
nTPM
HPA Brain:
52.7
nTPM
GTEx:
46.7
nTPM
FANTOM5:
55.9
Scaled Tags Per Million
Macaque:
32.1
nTPM
Mouse:
19.3
nTPM
Rat:
24.1
nTPM
Pig:
23.2
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 49.1
2411
Female, age 72, unknown
53.6
2019
Male, age 18, unknown
53.2
1870
Female, age 42, unknown
52.9
1833
Male, age 53, unknown
50.8
2666
Male, age 74, left hemisphere
50.4
1830
Male, age 51, unknown
49.4
2828
Female, age 72, unknown
47.5
1827
Male, age 72, unknown
47.4
2586
Male, age 75, left hemisphere
45.4
2219
Male, age 76, both hemispheres
40.2
Dorsal raphe nucleus nTPM: 52.2
2016
Female, age 72, unknown
53.2
2298
Female, age 72, unknown
53.1
2750
Male, age 76, both hemispheres
52.9
2047
Male, age 72, unknown
52.5
1828
Male, age 53, unknown
49.2
Inferior colliculus nTPM: 46.9
2097
Female, age 72, unknown
50.1
1890
Male, age 53, unknown
47.9
1848
Female, age 42, unknown
47.1
2849
Male, age 72, unknown
42.6
Median raphe nucleus nTPM: 52.1
2220
Male, age 76, midline
52.1
Periaquaductal grey, anterior nTPM: 44.5
2502
Female, age 75, unknown
45.7
1947
Male, age 18, unknown
44.6
1795
Male, age 51, unknown
43.2
Periaquaductal grey, dorsal nTPM: 48.3
2464
Female, age 72, unknown
49.5
1840
Male, age 53, unknown
48.9
2850
Male, age 76, both hemispheres
47.5
1831
Male, age 72, unknown
47.3
Periaquaductal grey, lateral nTPM: 46.4
2053
Male, age 18, unknown
47.8
2140
Male, age 76, both hemispheres
46.6
2272
Male, age 74, both hemispheres
44.9
Pretectal area nTPM: 46.6
2273
Male, age 74, both hemispheres
51.6
2224
Female, age 72, unknown
50.5
1817
Female, age 42, unknown
50.1
2007
Male, age 72, unknown
48.3
2316
Male, age 76, right hemisphere
47.5
1815
Male, age 53, unknown
46.4
2667
Female, age 75, unknown
46.4
1816
Male, age 51, unknown
44.8
1944
Female, age 72, unknown
43.9
2825
Male, age 18, unknown
42.4
2407
Male, age 75, both hemispheres
41.0
Red nucleus nTPM: 51.2
1821
Female, age 72, unknown
58.7
1904
Male, age 53, unknown
56.9
1954
Female, age 42, unknown
51.6
2503
Female, age 72, unknown
51.3
2227
Male, age 72, unknown
50.8
2823
Male, age 76, right hemisphere
50.8
2785
Male, age 18, unknown
50.5
1865
Male, age 51, unknown
50.4
2769
Male, age 72, unknown
49.9
2725
Female, age 75, unknown
49.8
2588
Male, age 74, left hemisphere
48.8
2584
Male, age 75, left hemisphere
45.6
Substantia nigra nTPM: 52.7
2409
Female, age 72, unknown
59.6
1851
Male, age 51, unknown
58.1
2241
Male, age 72, unknown
54.4
1916
Female, age 42, unknown
53.6
2699
Male, age 18, unknown
53.1
2590
Female, age 75, unknown
50.8
2583
Male, age 75, right hemisphere
50.7
2665
Male, age 74, both hemispheres
49.3
1941
Male, age 53, unknown
49.0
1889
Female, age 72, unknown
48.0
Superior colliculus nTPM: 46.3
1913
Female, age 42, unknown
51.9
1995
Male, age 72, unknown
51.0
2668
Female, age 75, unknown
48.0
1839
Male, age 51, unknown
46.7
2587
Male, age 74, left hemisphere
46.4
1895
Male, age 76, right hemisphere
45.7
2261
Male, age 18, unknown
45.2
2087
Female, age 72, unknown
44.2
1796
Male, age 53, unknown
42.9
2664
Male, age 75, both hemispheres
41.1
Ventral tegmental area nTPM: 51.8
2021
Male, age 53, unknown
53.1
2410
Female, age 72, unknown
53.0
1915
Female, age 42, unknown
52.9
2223
Female, age 72, unknown
52.0
2218
Male, age 76, both hemispheres
49.9
1942
Male, age 51, unknown
49.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 46.7
Samples: 183
Max nTPM: 71.8
Min nTPM: 29.8
Std nTPM: 7.3
Median nTPM: 45.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
71.8
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
70.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
66.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
66.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
65.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
64.7
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
60.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
60.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
60.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
59.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
59.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
58.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
58.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
58.0
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
57.8
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
57.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
57.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
57.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
57.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
56.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
56.3
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
56.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
55.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
55.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
54.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
54.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
54.4
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
54.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
54.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
53.4
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
53.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
53.2
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
53.0
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
53.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
52.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
52.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
52.2
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
51.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
51.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
51.7
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
51.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
51.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
51.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
51.2
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
51.0
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
51.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
50.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
50.4
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
50.3
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
50.2
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
50.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
50.1
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
50.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
50.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
49.8
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
49.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
49.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
49.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
49.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
49.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
49.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
48.9
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
48.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
48.8
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
48.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
48.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
48.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
48.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
48.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
47.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
47.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
47.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
47.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
47.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
47.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
47.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
47.2
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
47.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
47.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
47.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
47.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
46.9
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
46.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
46.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
46.6
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
46.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
46.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
46.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
46.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
46.1
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
46.0
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
45.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
45.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
45.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
45.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
44.9
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
44.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
44.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
44.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
44.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
44.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
44.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
44.3
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
44.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
44.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
44.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
44.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
44.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
43.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
43.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
43.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
43.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
43.7
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
43.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
43.6
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
43.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
43.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
43.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
43.3
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
43.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
43.0
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
42.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
42.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
42.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
42.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
42.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
42.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
42.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
42.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
42.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
42.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
42.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
42.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
42.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
41.9
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
41.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
41.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
41.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
41.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
41.4
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
41.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
41.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
41.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
41.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
41.1
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
41.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
40.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
40.7
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
40.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
40.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
40.2
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
40.2
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
40.2
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
40.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
39.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
39.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
39.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
39.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
39.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
39.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
39.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
38.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
38.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
38.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
38.3
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
38.1
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
38.1
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
37.8
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
37.8
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
37.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
37.2
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
37.2
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
37.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
37.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
36.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
36.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
36.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
36.0
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
35.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
34.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
33.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
32.7
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
29.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.1
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 32.1
Samples: 1
Max nTPM: 32.1
Min nTPM: 32.1
Sample A
32.1
Midbrain nTPM: 28.3
Samples: 1
Max nTPM: 28.3
Min nTPM: 28.3
Sample A
28.3
Superior colliculi nTPM: 28.2
Samples: 1
Max nTPM: 28.2
Min nTPM: 28.2
Sample A
28.2
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.2
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 22.4
Samples: 3
Max nTPM: 25.6
Min nTPM: 18.9
Sample A
Female
25.6
Sample B
Female
22.8
Sample C
Male
18.9
Midbrain nTPM: 18.8
Samples: 3
Max nTPM: 20.5
Min nTPM: 15.9
Sample B
Female
20.1
Sample C
Male
20.5
Sample D
Male
15.9
Periaqueductal gray nTPM: 16.8
Samples: 3
Max nTPM: 18.3
Min nTPM: 15.4
Sample B
Female
18.3
Sample C
Male
16.8
Sample D
Male
15.4
Superior colliculi nTPM: 23.2
Samples: 4
Max nTPM: 29.2
Min nTPM: 19.1
Sample A
Female
23.9
Sample B
Female
29.2
Sample C
Male
20.5
Sample D
Male
19.1
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 19.3
Samples: 4
Max nTPM: 20.1
Min nTPM: 18.3
Sample A
19.7
Sample B
20.1
Sample C
19.0
Sample D
18.3
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.1
Rat sample
Sample description
nTPM
Midbrain nTPM: 24.1
Samples: 4
Max nTPM: 25.5
Min nTPM: 22.7
Sample A
25.5
Sample A
23.8
Sample A
24.5
Sample A
22.7
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The Human Protein Atlas project is funded
