A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.7
nTPM
Monaco:
66.0
nTPM
Schmiedel:
52.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.7
HPA sample
nTPM
NK-cell nTPM: 15.7
Samples: 6
Max nTPM: 25.4
Min nTPM: 10.9
P10809_1013
13.2
P10809_1033
10.9
P10809_1052
13.4
P10809_1071
13.0
P10809_1093
18.4
P10809_1103
25.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.0
Monaco sample
nTPM
NK-cell nTPM: 66.0
Samples: 4
Max nTPM: 84.8
Min nTPM: 44.3
RHH5316_R3683
64.8
RHH5224_R3596
44.3
RHH5253_R3625
84.8
RHH5282_R3654
70.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.2
Schmiedel sample id
TPM
NK-cell TPM: 52.2
Samples: 90
Max TPM: 69.1
Min TPM: 37.6
NK_1
69.1
NK_2
68.7
NK_3
67.7
NK_4
65.6
NK_5
64.9
NK_6
64.9
NK_7
64.0
NK_8
63.3
NK_9
63.0
NK_10
62.7
NK_11
62.3
NK_12
60.6
NK_13
60.3
NK_14
60.2
NK_15
60.2
NK_16
60.1
NK_17
59.4
NK_18
59.1
NK_19
58.7
NK_20
58.0
NK_21
57.9
NK_22
57.5
NK_23
57.2
NK_24
56.9
NK_25
56.8
NK_26
56.6
NK_27
56.4
NK_28
56.2
NK_29
56.1
NK_30
55.5
NK_31
55.3
NK_32
55.2
NK_33
55.1
NK_34
54.4
NK_35
54.3
NK_36
54.2
NK_37
54.0
NK_38
54.0
NK_39
53.2
NK_40
52.7
NK_41
52.7
NK_42
52.4
NK_43
52.3
NK_44
52.2
NK_45
52.1
NK_46
52.0
NK_47
51.8
NK_48
51.7
NK_49
51.6
NK_50
51.5
NK_51
51.4
NK_52
51.4
NK_53
50.8
NK_54
50.7
NK_55
50.2
NK_56
50.1
NK_57
49.7
NK_58
49.4
NK_59
48.9
NK_60
48.8
NK_61
48.3
NK_62
48.2
NK_63
47.5
NK_64
47.2
NK_65
46.9
NK_66
46.9
NK_67
46.5
NK_68
46.1
NK_69
46.0
NK_70
45.9
NK_71
45.5
NK_72
45.2
NK_73
45.1
NK_74
44.9
NK_75
44.6
NK_76
44.2
NK_77
44.1
NK_78
44.0
NK_79
43.9
NK_80
42.9
NK_81
42.0
NK_82
41.7
NK_83
41.3
NK_84
41.0
NK_85
40.7
NK_86
40.5
NK_87
40.2
NK_88
40.0
NK_89
39.6
NK_90
37.6
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