A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
138.4
nTPM
Monaco:
415.7
nTPM
Schmiedel:
147.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
138.4
HPA sample
nTPM
Classical monocyte nTPM: 138.4
Samples: 6
Max nTPM: 211.4
Min nTPM: 96.4
P10809_1003
145.8
P10809_1020
128.6
P10809_1039
211.4
P10809_1058
96.4
P10809_1080
113.1
P10809_1107
135.1
Intermediate monocyte nTPM: 84.2
Samples: 6
Max nTPM: 117.9
Min nTPM: 70.6
P10809_1004
83.4
P10809_1023
75.7
P10809_1042
76.6
P10809_1061
70.6
P10809_1081
81.0
P10809_1108
117.9
Non-classical monocyte nTPM: 70.0
Samples: 5
Max nTPM: 88.6
Min nTPM: 51.9
P10809_1005
88.6
P10809_1053
67.2
P10809_1072
51.9
P10809_1082
58.0
P10809_1109
84.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
415.7
Monaco sample
nTPM
Classical monocyte nTPM: 415.7
Samples: 4
Max nTPM: 490.0
Min nTPM: 334.4
RHH5313_R3680
376.8
RHH5221_R3593
490.0
RHH5250_R3622
461.7
RHH5279_R3651
334.4
Intermediate monocyte nTPM: 246.9
Samples: 4
Max nTPM: 309.7
Min nTPM: 198.7
RHH5314_R3681
244.0
RHH5222_R3594
235.2
RHH5251_R3623
309.7
RHH5280_R3652
198.7
Non-classical monocyte nTPM: 236.2
Samples: 4
Max nTPM: 330.5
Min nTPM: 182.2
RHH5315_R3682
243.4
RHH5223_R3595
188.6
RHH5252_R3624
330.5
RHH5281_R3653
182.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
147.5
Schmiedel sample id
TPM
Classical monocyte TPM: 147.5
Samples: 91
Max TPM: 183.4
Min TPM: 113.0
MONOCYTES_1
183.4
MONOCYTES_2
180.9
MONOCYTES_3
176.4
MONOCYTES_4
174.1
MONOCYTES_5
174.1
MONOCYTES_6
169.8
MONOCYTES_7
169.3
MONOCYTES_8
168.3
MONOCYTES_9
167.9
MONOCYTES_10
167.7
MONOCYTES_11
166.9
MONOCYTES_12
166.7
MONOCYTES_13
166.6
MONOCYTES_14
166.0
MONOCYTES_15
165.3
MONOCYTES_16
164.6
MONOCYTES_17
163.2
MONOCYTES_18
161.5
MONOCYTES_19
160.6
MONOCYTES_20
159.7
MONOCYTES_21
158.3
MONOCYTES_22
157.9
MONOCYTES_23
157.0
MONOCYTES_24
156.1
MONOCYTES_25
156.0
MONOCYTES_26
155.7
MONOCYTES_27
155.1
MONOCYTES_28
153.9
MONOCYTES_29
152.5
MONOCYTES_30
152.4
MONOCYTES_31
152.1
MONOCYTES_32
151.6
MONOCYTES_33
150.7
MONOCYTES_34
150.5
MONOCYTES_35
149.8
MONOCYTES_36
149.7
MONOCYTES_37
149.4
MONOCYTES_38
149.3
MONOCYTES_39
149.2
MONOCYTES_40
149.2
MONOCYTES_41
148.7
MONOCYTES_42
148.3
MONOCYTES_43
148.3
MONOCYTES_44
148.2
MONOCYTES_45
148.1
MONOCYTES_46
148.0
MONOCYTES_47
147.9
MONOCYTES_48
147.9
MONOCYTES_49
147.8
MONOCYTES_50
146.8
MONOCYTES_51
145.7
MONOCYTES_52
145.3
MONOCYTES_53
145.3
MONOCYTES_54
145.0
MONOCYTES_55
145.0
MONOCYTES_56
144.1
MONOCYTES_57
143.8
MONOCYTES_58
143.7
MONOCYTES_59
143.1
MONOCYTES_60
141.7
MONOCYTES_61
141.6
MONOCYTES_62
141.3
MONOCYTES_63
140.4
MONOCYTES_64
139.6
MONOCYTES_65
138.8
MONOCYTES_66
137.9
MONOCYTES_67
136.7
MONOCYTES_68
136.5
MONOCYTES_69
136.1
MONOCYTES_70
136.1
MONOCYTES_71
135.4
MONOCYTES_72
134.4
MONOCYTES_73
134.0
MONOCYTES_74
134.0
MONOCYTES_75
133.4
MONOCYTES_76
132.4
MONOCYTES_77
132.3
MONOCYTES_78
132.0
MONOCYTES_79
131.4
MONOCYTES_80
130.0
MONOCYTES_81
129.1
MONOCYTES_82
129.1
MONOCYTES_83
128.6
MONOCYTES_84
127.7
MONOCYTES_85
126.1
MONOCYTES_86
124.7
MONOCYTES_87
124.2
MONOCYTES_88
122.7
MONOCYTES_89
118.5
MONOCYTES_90
115.7
MONOCYTES_91
113.0
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Non-classical monocyte TPM: 130.7
Samples: 90
Max TPM: 169.2
Min TPM: 101.0
M2_1
169.2
M2_2
161.7
M2_3
161.2
M2_4
158.1
M2_5
157.9
M2_6
153.9
M2_7
153.1
M2_8
151.4
M2_9
150.2
M2_10
148.3
M2_11
148.3
M2_12
147.9
M2_13
146.4
M2_14
144.8
M2_15
144.3
M2_16
144.1
M2_17
141.8
M2_18
141.7
M2_19
141.2
M2_20
140.2
M2_21
139.9
M2_22
139.7
M2_23
139.6
M2_24
139.1
M2_25
138.4
M2_26
137.5
M2_27
136.3
M2_28
135.5
M2_29
135.5
M2_30
135.4
M2_31
135.1
M2_32
135.1
M2_33
135.0
M2_34
134.5
M2_35
134.3
M2_36
133.9
M2_37
133.6
M2_38
133.3
M2_39
132.6
M2_40
132.6
M2_41
132.5
M2_42
132.1
M2_43
131.3
M2_44
131.3
M2_45
131.3
M2_46
130.5
M2_47
130.4
M2_48
129.5
M2_49
129.0
M2_50
128.6
M2_51
128.1
M2_52
128.0
M2_53
127.4
M2_54
127.1
M2_55
127.0
M2_56
127.0
M2_57
126.9
M2_58
126.5
M2_59
126.2
M2_60
125.8
M2_61
125.4
M2_62
123.8
M2_63
123.7
M2_64
123.5
M2_65
123.3
M2_66
122.8
M2_67
122.4
M2_68
119.8
M2_69
119.6
M2_70
118.4
M2_71
118.2
M2_72
117.6
M2_73
117.6
M2_74
117.3
M2_75
117.3
M2_76
115.8
M2_77
115.6
M2_78
114.8
M2_79
112.6
M2_80
112.5
M2_81
111.3
M2_82
111.3
M2_83
111.1
M2_84
109.4
M2_85
109.2
M2_86
109.1
M2_87
107.1
M2_88
106.4
M2_89
105.9
M2_90
101.0
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