A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.6
nTPM
Monaco:
175.1
nTPM
Schmiedel:
57.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.6
HPA sample
nTPM
Memory B-cell nTPM: 11.6
Samples: 6
Max nTPM: 16.3
Min nTPM: 7.3
P10809_1017
13.6
P10809_1025
12.2
P10809_1044
9.7
P10809_1063
7.3
P10809_1092
10.7
P10809_1105
16.3
Naive B-cell nTPM: 10.1
Samples: 6
Max nTPM: 13.3
Min nTPM: 5.8
P10809_1011
10.4
P10809_1029
9.2
P10809_1048
5.8
P10809_1067
10.3
P10809_1091
11.7
P10809_1104
13.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
175.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 61.5
Samples: 4
Max nTPM: 76.9
Min nTPM: 46.5
RHH5310_R3677
56.4
RHH5218_R3590
46.5
RHH5247_R3619
66.2
RHH5276_R3648
76.9
Naive B-cell nTPM: 66.0
Samples: 4
Max nTPM: 89.2
Min nTPM: 48.4
RHH5308_R3675
48.4
RHH5216_R3588
51.2
RHH5245_R3617
89.2
RHH5274_R3646
75.0
Non-switched memory B-cell nTPM: 55.6
Samples: 4
Max nTPM: 61.1
Min nTPM: 41.6
RHH5309_R3676
61.1
RHH5217_R3589
41.6
RHH5246_R3618
59.0
RHH5275_R3647
60.8
Plasmablast nTPM: 175.1
Samples: 4
Max nTPM: 230.0
Min nTPM: 107.0
RHH5312_R3679
107.0
RHH5220_R3592
179.3
RHH5249_R3621
184.2
RHH5278_R3650
230.0
Switched memory B-cell nTPM: 64.6
Samples: 4
Max nTPM: 84.2
Min nTPM: 49.3
RHH5311_R3678
53.8
RHH5219_R3591
71.1
RHH5248_R3620
49.3
RHH5277_R3649
84.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.0
Schmiedel sample id
TPM
Naive B-cell TPM: 57.0
Samples: 91
Max TPM: 68.1
Min TPM: 40.5
B_CELL_NAIVE_1
68.1
B_CELL_NAIVE_2
67.9
B_CELL_NAIVE_3
65.2
B_CELL_NAIVE_4
64.6
B_CELL_NAIVE_5
63.8
B_CELL_NAIVE_6
63.6
B_CELL_NAIVE_7
63.4
B_CELL_NAIVE_8
62.6
B_CELL_NAIVE_9
61.6
B_CELL_NAIVE_10
61.6
B_CELL_NAIVE_11
61.5
B_CELL_NAIVE_12
61.4
B_CELL_NAIVE_13
61.1
B_CELL_NAIVE_14
60.9
B_CELL_NAIVE_15
60.8
B_CELL_NAIVE_16
60.7
B_CELL_NAIVE_17
60.7
B_CELL_NAIVE_18
60.4
B_CELL_NAIVE_19
60.2
B_CELL_NAIVE_20
60.0
B_CELL_NAIVE_21
59.8
B_CELL_NAIVE_22
59.7
B_CELL_NAIVE_23
59.6
B_CELL_NAIVE_24
59.5
B_CELL_NAIVE_25
59.2
B_CELL_NAIVE_26
59.2
B_CELL_NAIVE_27
59.1
B_CELL_NAIVE_28
58.9
B_CELL_NAIVE_29
58.8
B_CELL_NAIVE_30
58.8
B_CELL_NAIVE_31
58.7
B_CELL_NAIVE_32
58.5
B_CELL_NAIVE_33
58.4
B_CELL_NAIVE_34
58.4
B_CELL_NAIVE_35
58.0
B_CELL_NAIVE_36
58.0
B_CELL_NAIVE_37
58.0
B_CELL_NAIVE_38
57.8
B_CELL_NAIVE_39
57.8
B_CELL_NAIVE_40
57.6
B_CELL_NAIVE_41
57.4
B_CELL_NAIVE_42
57.4
B_CELL_NAIVE_43
57.3
B_CELL_NAIVE_44
57.2
B_CELL_NAIVE_45
57.1
B_CELL_NAIVE_46
57.1
B_CELL_NAIVE_47
56.9
B_CELL_NAIVE_48
56.8
B_CELL_NAIVE_49
56.7
B_CELL_NAIVE_50
56.5
B_CELL_NAIVE_51
56.4
B_CELL_NAIVE_52
56.3
B_CELL_NAIVE_53
56.3
B_CELL_NAIVE_54
56.3
B_CELL_NAIVE_55
56.2
B_CELL_NAIVE_56
56.2
B_CELL_NAIVE_57
56.2
B_CELL_NAIVE_58
56.1
B_CELL_NAIVE_59
56.0
B_CELL_NAIVE_60
55.9
B_CELL_NAIVE_61
55.9
B_CELL_NAIVE_62
55.7
B_CELL_NAIVE_63
55.7
B_CELL_NAIVE_64
55.4
B_CELL_NAIVE_65
55.4
B_CELL_NAIVE_66
55.3
B_CELL_NAIVE_67
55.2
B_CELL_NAIVE_68
55.1
B_CELL_NAIVE_69
55.1
B_CELL_NAIVE_70
55.0
B_CELL_NAIVE_71
55.0
B_CELL_NAIVE_72
54.2
B_CELL_NAIVE_73
53.8
B_CELL_NAIVE_74
53.5
B_CELL_NAIVE_75
53.5
B_CELL_NAIVE_76
53.3
B_CELL_NAIVE_77
53.2
B_CELL_NAIVE_78
53.0
B_CELL_NAIVE_79
53.0
B_CELL_NAIVE_80
52.8
B_CELL_NAIVE_81
52.8
B_CELL_NAIVE_82
52.6
B_CELL_NAIVE_83
52.5
B_CELL_NAIVE_84
52.3
B_CELL_NAIVE_85
52.1
B_CELL_NAIVE_86
49.7
B_CELL_NAIVE_87
49.6
B_CELL_NAIVE_88
48.1
B_CELL_NAIVE_89
47.9
B_CELL_NAIVE_90
47.1
B_CELL_NAIVE_91
40.5
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The Human Protein Atlas project is funded
