A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.4
nTPM
Monaco:
120.1
nTPM
Schmiedel:
116.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.4
HPA sample
nTPM
NK-cell nTPM: 15.4
Samples: 6
Max nTPM: 21.4
Min nTPM: 6.5
P10809_1013
18.6
P10809_1033
6.5
P10809_1052
21.4
P10809_1071
13.3
P10809_1093
15.0
P10809_1103
17.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
120.1
Monaco sample
nTPM
NK-cell nTPM: 120.2
Samples: 4
Max nTPM: 173.7
Min nTPM: 93.0
RHH5316_R3683
108.9
RHH5224_R3596
93.0
RHH5253_R3625
173.7
RHH5282_R3654
105.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.9
Schmiedel sample id
TPM
NK-cell TPM: 116.9
Samples: 90
Max TPM: 149.3
Min TPM: 88.5
NK_1
149.3
NK_2
146.0
NK_3
143.7
NK_4
140.4
NK_5
138.6
NK_6
138.4
NK_7
138.3
NK_8
136.3
NK_9
135.4
NK_10
135.3
NK_11
135.1
NK_12
134.9
NK_13
134.7
NK_14
132.6
NK_15
132.1
NK_16
130.5
NK_17
130.0
NK_18
129.4
NK_19
129.1
NK_20
127.5
NK_21
127.3
NK_22
126.8
NK_23
126.1
NK_24
124.8
NK_25
124.8
NK_26
124.6
NK_27
123.8
NK_28
123.6
NK_29
123.5
NK_30
123.5
NK_31
123.1
NK_32
122.1
NK_33
121.6
NK_34
121.2
NK_35
121.0
NK_36
120.6
NK_37
119.4
NK_38
119.3
NK_39
118.9
NK_40
118.4
NK_41
117.8
NK_42
117.4
NK_43
116.7
NK_44
116.4
NK_45
115.9
NK_46
115.6
NK_47
115.6
NK_48
115.4
NK_49
115.3
NK_50
114.4
NK_51
114.3
NK_52
114.3
NK_53
114.0
NK_54
113.3
NK_55
112.0
NK_56
111.5
NK_57
110.6
NK_58
110.6
NK_59
110.5
NK_60
110.0
NK_61
109.8
NK_62
109.7
NK_63
109.6
NK_64
109.5
NK_65
109.0
NK_66
108.1
NK_67
107.3
NK_68
107.2
NK_69
107.2
NK_70
107.1
NK_71
106.7
NK_72
105.7
NK_73
105.7
NK_74
104.8
NK_75
104.7
NK_76
103.7
NK_77
102.8
NK_78
101.6
NK_79
101.1
NK_80
100.2
NK_81
99.4
NK_82
98.7
NK_83
97.0
NK_84
97.0
NK_85
96.7
NK_86
94.6
NK_87
93.6
NK_88
92.9
NK_89
88.7
NK_90
88.5
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