MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.0 nTPM
HPA Brain:69.2 nTPM
GTEx:42.0 nTPM
FANTOM5:139.3 Scaled Tags Per Million
Pig:66.9 nTPM
Mouse:59.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 69.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.2
2666 Male, age 74, left hemisphere 74.6
1870 Female, age 42, unknown 72.4
2586 Male, age 75, left hemisphere 72.4
2019 Male, age 18, unknown 66.2
1833 Male, age 53, unknown 65.6
1830 Male, age 51, unknown 65.0
2411 Female, age 72, unknown 64.0
2828 Female, age 72, unknown 62.5
1827 Male, age 72, unknown 61.5
2219 Male, age 76, both hemispheres 47.2
Dorsal raphe nucleus
nTPM: 63.8
2750 Male, age 76, both hemispheres 67.4
1828 Male, age 53, unknown 66.5
2016 Female, age 72, unknown 64.2
2047 Male, age 72, unknown 61.3
2298 Female, age 72, unknown 59.9
Inferior colliculus
nTPM: 64.2
1848 Female, age 42, unknown 64.5
2097 Female, age 72, unknown 64.2
2849 Male, age 72, unknown 64.2
1890 Male, age 53, unknown 63.9
Median raphe nucleus
nTPM: 68.6
2220 Male, age 76, midline 68.6
Periaquaductal grey, anterior
nTPM: 64.3
1947 Male, age 18, unknown 70.4
2502 Female, age 75, unknown 65.6
1795 Male, age 51, unknown 56.9
Periaquaductal grey, dorsal
nTPM: 63.0
2850 Male, age 76, both hemispheres 69.6
1831 Male, age 72, unknown 64.0
1840 Male, age 53, unknown 60.3
2464 Female, age 72, unknown 58.1
Periaquaductal grey, lateral
nTPM: 60.7
2053 Male, age 18, unknown 62.6
2140 Male, age 76, both hemispheres 61.5
2272 Male, age 74, both hemispheres 57.9
Pretectal area
nTPM: 65.6
1816 Male, age 51, unknown 75.9
1817 Female, age 42, unknown 74.7
1944 Female, age 72, unknown 73.2
1815 Male, age 53, unknown 72.3
2007 Male, age 72, unknown 70.6
2316 Male, age 76, right hemisphere 61.7
2407 Male, age 75, both hemispheres 60.3
2825 Male, age 18, unknown 59.9
2273 Male, age 74, both hemispheres 58.4
2667 Female, age 75, unknown 57.6
2224 Female, age 72, unknown 56.8
Red nucleus
nTPM: 68.3
1821 Female, age 72, unknown 76.6
2503 Female, age 72, unknown 71.9
2725 Female, age 75, unknown 71.8
2584 Male, age 75, left hemisphere 70.5
1904 Male, age 53, unknown 69.3
1865 Male, age 51, unknown 69.2
1954 Female, age 42, unknown 67.7
2785 Male, age 18, unknown 67.4
2227 Male, age 72, unknown 65.7
2769 Male, age 72, unknown 65.3
2588 Male, age 74, left hemisphere 63.4
2823 Male, age 76, right hemisphere 60.5
Substantia nigra
nTPM: 69.2
2409 Female, age 72, unknown 75.8
2665 Male, age 74, both hemispheres 75.7
2241 Male, age 72, unknown 72.8
1889 Female, age 72, unknown 70.8
2583 Male, age 75, right hemisphere 69.2
1851 Male, age 51, unknown 68.4
1916 Female, age 42, unknown 67.4
1941 Male, age 53, unknown 65.4
2590 Female, age 75, unknown 64.4
2699 Male, age 18, unknown 61.9
Superior colliculus
nTPM: 64.8
2668 Female, age 75, unknown 72.7
1913 Female, age 42, unknown 69.7
2261 Male, age 18, unknown 68.3
2587 Male, age 74, left hemisphere 67.1
1995 Male, age 72, unknown 65.9
2087 Female, age 72, unknown 63.0
1839 Male, age 51, unknown 62.2
1796 Male, age 53, unknown 61.4
2664 Male, age 75, both hemispheres 60.6
1895 Male, age 76, right hemisphere 57.4
Ventral tegmental area
nTPM: 65.4
2410 Female, age 72, unknown 69.1
2223 Female, age 72, unknown 67.5
1942 Male, age 51, unknown 65.1
1915 Female, age 42, unknown 64.6
2021 Male, age 53, unknown 64.0
2218 Male, age 76, both hemispheres 62.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.0
Samples: 183

Max nTPM: 89.9
Min nTPM: 26.6
Std nTPM: 9.6
Median nTPM: 41.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 89.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 85.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 68.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 66.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 65.1
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 64.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 63.9
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 62.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 60.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 58.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 57.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 139.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.3
FF:10158-103A5 76 years, female 139.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 66.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.8
Samples: 4

Max nTPM: 64.5
Min nTPM: 56.7
Sample A Female 64.5
Sample B Female 56.9
Sample C Male 61.0
Sample D Male 56.7
Midbrain
nTPM: 66.9
Samples: 4

Max nTPM: 105.7
Min nTPM: 47.2
Sample A Female 105.7
Sample B Female 50.8
Sample C Male 63.9
Sample D Male 47.2
Periaqueductal gray
nTPM: 53.0
Samples: 3

Max nTPM: 57.6
Min nTPM: 48.9
Sample B Female 52.4
Sample C Male 57.6
Sample D Male 48.9
Superior colliculi
nTPM: 57.7
Samples: 4

Max nTPM: 62.0
Min nTPM: 52.5
Sample A Female 59.2
Sample B Female 52.5
Sample C Male 62.0
Sample D Male 57.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 59.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.6
Samples: 4

Max nTPM: 61.4
Min nTPM: 57.5
Sample A Male 57.5
Sample B Male 61.4
Sample C Female 61.0
Sample D Female 58.3

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