A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.0
nTPM
Monaco:
181.8
nTPM
Schmiedel:
255.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.0
HPA sample
nTPM
Memory B-cell nTPM: 11.0
Samples: 6
Max nTPM: 15.9
Min nTPM: 2.0
P10809_1017
14.5
P10809_1025
12.3
P10809_1044
2.0
P10809_1063
9.5
P10809_1092
12.1
P10809_1105
15.9
Naive B-cell nTPM: 7.0
Samples: 6
Max nTPM: 9.4
Min nTPM: 5.4
P10809_1011
5.4
P10809_1029
7.0
P10809_1048
6.6
P10809_1067
6.0
P10809_1091
7.7
P10809_1104
9.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
181.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 71.8
Samples: 4
Max nTPM: 103.4
Min nTPM: 61.1
RHH5310_R3677
103.4
RHH5218_R3590
61.1
RHH5247_R3619
61.2
RHH5276_R3648
61.3
Naive B-cell nTPM: 49.6
Samples: 4
Max nTPM: 78.4
Min nTPM: 33.7
RHH5308_R3675
33.7
RHH5216_R3588
78.4
RHH5245_R3617
40.5
RHH5274_R3646
45.6
Non-switched memory B-cell nTPM: 62.0
Samples: 4
Max nTPM: 67.1
Min nTPM: 56.9
RHH5309_R3676
57.7
RHH5217_R3589
66.3
RHH5246_R3618
67.1
RHH5275_R3647
56.9
Plasmablast nTPM: 181.8
Samples: 4
Max nTPM: 283.3
Min nTPM: 128.9
RHH5312_R3679
132.5
RHH5220_R3592
283.3
RHH5249_R3621
182.6
RHH5278_R3650
128.9
Switched memory B-cell nTPM: 81.8
Samples: 4
Max nTPM: 92.5
Min nTPM: 71.9
RHH5311_R3678
92.5
RHH5219_R3591
90.1
RHH5248_R3620
71.9
RHH5277_R3649
72.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
255.6
Schmiedel sample id
TPM
Naive B-cell TPM: 255.6
Samples: 91
Max TPM: 392.3
Min TPM: 182.5
B_CELL_NAIVE_1
392.3
B_CELL_NAIVE_2
348.7
B_CELL_NAIVE_3
348.2
B_CELL_NAIVE_4
346.3
B_CELL_NAIVE_5
341.8
B_CELL_NAIVE_6
337.6
B_CELL_NAIVE_7
333.2
B_CELL_NAIVE_8
332.1
B_CELL_NAIVE_9
328.0
B_CELL_NAIVE_10
326.9
B_CELL_NAIVE_11
325.2
B_CELL_NAIVE_12
308.6
B_CELL_NAIVE_13
304.9
B_CELL_NAIVE_14
300.4
B_CELL_NAIVE_15
298.3
B_CELL_NAIVE_16
294.6
B_CELL_NAIVE_17
292.0
B_CELL_NAIVE_18
289.7
B_CELL_NAIVE_19
286.9
B_CELL_NAIVE_20
285.7
B_CELL_NAIVE_21
285.5
B_CELL_NAIVE_22
284.7
B_CELL_NAIVE_23
284.4
B_CELL_NAIVE_24
283.2
B_CELL_NAIVE_25
280.1
B_CELL_NAIVE_26
278.7
B_CELL_NAIVE_27
278.0
B_CELL_NAIVE_28
277.4
B_CELL_NAIVE_29
275.1
B_CELL_NAIVE_30
274.3
B_CELL_NAIVE_31
268.2
B_CELL_NAIVE_32
267.8
B_CELL_NAIVE_33
267.0
B_CELL_NAIVE_34
265.6
B_CELL_NAIVE_35
265.1
B_CELL_NAIVE_36
259.9
B_CELL_NAIVE_37
259.6
B_CELL_NAIVE_38
258.2
B_CELL_NAIVE_39
255.3
B_CELL_NAIVE_40
254.7
B_CELL_NAIVE_41
252.9
B_CELL_NAIVE_42
250.0
B_CELL_NAIVE_43
249.8
B_CELL_NAIVE_44
249.5
B_CELL_NAIVE_45
244.7
B_CELL_NAIVE_46
244.6
B_CELL_NAIVE_47
242.4
B_CELL_NAIVE_48
241.8
B_CELL_NAIVE_49
241.0
B_CELL_NAIVE_50
240.7
B_CELL_NAIVE_51
239.9
B_CELL_NAIVE_52
239.9
B_CELL_NAIVE_53
237.9
B_CELL_NAIVE_54
237.3
B_CELL_NAIVE_55
237.0
B_CELL_NAIVE_56
236.1
B_CELL_NAIVE_57
236.1
B_CELL_NAIVE_58
236.0
B_CELL_NAIVE_59
233.8
B_CELL_NAIVE_60
231.8
B_CELL_NAIVE_61
231.4
B_CELL_NAIVE_62
230.0
B_CELL_NAIVE_63
229.0
B_CELL_NAIVE_64
228.3
B_CELL_NAIVE_65
228.0
B_CELL_NAIVE_66
226.5
B_CELL_NAIVE_67
226.4
B_CELL_NAIVE_68
225.3
B_CELL_NAIVE_69
225.2
B_CELL_NAIVE_70
225.2
B_CELL_NAIVE_71
224.5
B_CELL_NAIVE_72
222.5
B_CELL_NAIVE_73
222.3
B_CELL_NAIVE_74
216.0
B_CELL_NAIVE_75
215.8
B_CELL_NAIVE_76
213.9
B_CELL_NAIVE_77
211.4
B_CELL_NAIVE_78
210.5
B_CELL_NAIVE_79
209.3
B_CELL_NAIVE_80
208.9
B_CELL_NAIVE_81
207.5
B_CELL_NAIVE_82
206.4
B_CELL_NAIVE_83
203.8
B_CELL_NAIVE_84
201.2
B_CELL_NAIVE_85
199.5
B_CELL_NAIVE_86
197.4
B_CELL_NAIVE_87
193.8
B_CELL_NAIVE_88
193.2
B_CELL_NAIVE_89
190.4
B_CELL_NAIVE_90
187.4
B_CELL_NAIVE_91
182.5
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