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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • IMMUNE

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  • CDV3
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:11.0 nTPM
Monaco:181.8 nTPM
Schmiedel:255.6 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

11.0
HPA sample nTPM
Memory B-cell
nTPM: 11.0
Samples: 6

Max nTPM: 15.9
Min nTPM: 2.0
P10809_1017 14.5
P10809_1025 12.3
P10809_1044 2.0
P10809_1063 9.5
P10809_1092 12.1
P10809_1105 15.9
Naive B-cell
nTPM: 7.0
Samples: 6

Max nTPM: 9.4
Min nTPM: 5.4
P10809_1011 5.4
P10809_1029 7.0
P10809_1048 6.6
P10809_1067 6.0
P10809_1091 7.7
P10809_1104 9.4

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

181.8
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 71.8
Samples: 4

Max nTPM: 103.4
Min nTPM: 61.1
RHH5310_R3677 103.4
RHH5218_R3590 61.1
RHH5247_R3619 61.2
RHH5276_R3648 61.3
Naive B-cell
nTPM: 49.6
Samples: 4

Max nTPM: 78.4
Min nTPM: 33.7
RHH5308_R3675 33.7
RHH5216_R3588 78.4
RHH5245_R3617 40.5
RHH5274_R3646 45.6
Non-switched memory B-cell
nTPM: 62.0
Samples: 4

Max nTPM: 67.1
Min nTPM: 56.9
RHH5309_R3676 57.7
RHH5217_R3589 66.3
RHH5246_R3618 67.1
RHH5275_R3647 56.9
Plasmablast
nTPM: 181.8
Samples: 4

Max nTPM: 283.3
Min nTPM: 128.9
RHH5312_R3679 132.5
RHH5220_R3592 283.3
RHH5249_R3621 182.6
RHH5278_R3650 128.9
Switched memory B-cell
nTPM: 81.8
Samples: 4

Max nTPM: 92.5
Min nTPM: 71.9
RHH5311_R3678 92.5
RHH5219_R3591 90.1
RHH5248_R3620 71.9
RHH5277_R3649 72.5

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

255.6
Schmiedel sample id TPM
Naive B-cell
TPM: 255.6
Samples: 91

Max TPM: 392.3
Min TPM: 182.5
B_CELL_NAIVE_1 392.3
B_CELL_NAIVE_2 348.7
B_CELL_NAIVE_3 348.2
B_CELL_NAIVE_4 346.3
B_CELL_NAIVE_5 341.8
B_CELL_NAIVE_6 337.6
B_CELL_NAIVE_7 333.2
B_CELL_NAIVE_8 332.1
B_CELL_NAIVE_9 328.0
B_CELL_NAIVE_10 326.9
B_CELL_NAIVE_11 325.2
B_CELL_NAIVE_12 308.6
B_CELL_NAIVE_13 304.9
B_CELL_NAIVE_14 300.4
B_CELL_NAIVE_15 298.3
B_CELL_NAIVE_16 294.6
B_CELL_NAIVE_17 292.0
B_CELL_NAIVE_18 289.7
B_CELL_NAIVE_19 286.9
B_CELL_NAIVE_20 285.7
B_CELL_NAIVE_21 285.5
B_CELL_NAIVE_22 284.7
B_CELL_NAIVE_23 284.4
B_CELL_NAIVE_24 283.2
B_CELL_NAIVE_25 280.1
B_CELL_NAIVE_26 278.7
B_CELL_NAIVE_27 278.0
B_CELL_NAIVE_28 277.4
B_CELL_NAIVE_29 275.1
B_CELL_NAIVE_30 274.3
B_CELL_NAIVE_31 268.2
B_CELL_NAIVE_32 267.8
B_CELL_NAIVE_33 267.0
B_CELL_NAIVE_34 265.6
B_CELL_NAIVE_35 265.1
B_CELL_NAIVE_36 259.9
B_CELL_NAIVE_37 259.6
B_CELL_NAIVE_38 258.2
B_CELL_NAIVE_39 255.3
B_CELL_NAIVE_40 254.7
B_CELL_NAIVE_41 252.9
B_CELL_NAIVE_42 250.0
B_CELL_NAIVE_43 249.8
B_CELL_NAIVE_44 249.5
B_CELL_NAIVE_45 244.7
B_CELL_NAIVE_46 244.6
B_CELL_NAIVE_47 242.4
B_CELL_NAIVE_48 241.8
B_CELL_NAIVE_49 241.0
B_CELL_NAIVE_50 240.7
B_CELL_NAIVE_51 239.9
B_CELL_NAIVE_52 239.9
B_CELL_NAIVE_53 237.9
B_CELL_NAIVE_54 237.3
B_CELL_NAIVE_55 237.0
B_CELL_NAIVE_56 236.1
B_CELL_NAIVE_57 236.1
B_CELL_NAIVE_58 236.0
B_CELL_NAIVE_59 233.8
B_CELL_NAIVE_60 231.8
B_CELL_NAIVE_61 231.4
B_CELL_NAIVE_62 230.0
B_CELL_NAIVE_63 229.0
B_CELL_NAIVE_64 228.3
B_CELL_NAIVE_65 228.0
B_CELL_NAIVE_66 226.5
B_CELL_NAIVE_67 226.4
B_CELL_NAIVE_68 225.3
B_CELL_NAIVE_69 225.2
B_CELL_NAIVE_70 225.2
B_CELL_NAIVE_71 224.5
B_CELL_NAIVE_72 222.5
B_CELL_NAIVE_73 222.3
B_CELL_NAIVE_74 216.0
B_CELL_NAIVE_75 215.8
B_CELL_NAIVE_76 213.9
B_CELL_NAIVE_77 211.4
B_CELL_NAIVE_78 210.5
B_CELL_NAIVE_79 209.3
B_CELL_NAIVE_80 208.9
B_CELL_NAIVE_81 207.5
B_CELL_NAIVE_82 206.4
B_CELL_NAIVE_83 203.8
B_CELL_NAIVE_84 201.2
B_CELL_NAIVE_85 199.5
B_CELL_NAIVE_86 197.4
B_CELL_NAIVE_87 193.8
B_CELL_NAIVE_88 193.2
B_CELL_NAIVE_89 190.4
B_CELL_NAIVE_90 187.4
B_CELL_NAIVE_91 182.5
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