A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.5
nTPM
Monaco:
94.5
nTPM
Schmiedel:
452.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.5
HPA sample
nTPM
Classical monocyte nTPM: 10.3
Samples: 6
Max nTPM: 12.7
Min nTPM: 7.0
P10809_1003
7.0
P10809_1020
9.6
P10809_1039
10.2
P10809_1058
12.7
P10809_1080
10.7
P10809_1107
11.8
Intermediate monocyte nTPM: 12.0
Samples: 6
Max nTPM: 16.6
Min nTPM: 8.6
P10809_1004
15.1
P10809_1023
11.8
P10809_1042
8.6
P10809_1061
9.6
P10809_1081
10.3
P10809_1108
16.6
Non-classical monocyte nTPM: 13.5
Samples: 5
Max nTPM: 17.5
Min nTPM: 10.7
P10809_1005
12.6
P10809_1053
10.7
P10809_1072
17.5
P10809_1082
12.6
P10809_1109
14.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.5
Monaco sample
nTPM
Classical monocyte nTPM: 86.1
Samples: 4
Max nTPM: 120.3
Min nTPM: 65.5
RHH5313_R3680
67.4
RHH5221_R3593
120.3
RHH5250_R3622
65.5
RHH5279_R3651
91.1
Intermediate monocyte nTPM: 94.5
Samples: 4
Max nTPM: 127.5
Min nTPM: 58.5
RHH5314_R3681
58.5
RHH5222_R3594
91.8
RHH5251_R3623
127.5
RHH5280_R3652
100.3
Non-classical monocyte nTPM: 93.6
Samples: 4
Max nTPM: 123.7
Min nTPM: 68.7
RHH5315_R3682
68.7
RHH5223_R3595
123.7
RHH5252_R3624
103.2
RHH5281_R3653
78.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
452.5
Schmiedel sample id
TPM
Classical monocyte TPM: 353.4
Samples: 91
Max TPM: 451.1
Min TPM: 258.0
MONOCYTES_1
451.1
MONOCYTES_2
446.1
MONOCYTES_3
440.4
MONOCYTES_4
434.4
MONOCYTES_5
432.3
MONOCYTES_6
424.2
MONOCYTES_7
418.5
MONOCYTES_8
418.3
MONOCYTES_9
417.6
MONOCYTES_10
410.8
MONOCYTES_11
410.7
MONOCYTES_12
408.9
MONOCYTES_13
399.3
MONOCYTES_14
398.4
MONOCYTES_15
397.5
MONOCYTES_16
397.1
MONOCYTES_17
397.0
MONOCYTES_18
394.0
MONOCYTES_19
391.7
MONOCYTES_20
390.3
MONOCYTES_21
388.1
MONOCYTES_22
385.9
MONOCYTES_23
379.8
MONOCYTES_24
379.6
MONOCYTES_25
378.8
MONOCYTES_26
377.4
MONOCYTES_27
376.6
MONOCYTES_28
376.3
MONOCYTES_29
374.4
MONOCYTES_30
374.2
MONOCYTES_31
369.9
MONOCYTES_32
368.6
MONOCYTES_33
368.1
MONOCYTES_34
366.9
MONOCYTES_35
366.7
MONOCYTES_36
364.5
MONOCYTES_37
364.2
MONOCYTES_38
363.6
MONOCYTES_39
362.0
MONOCYTES_40
361.7
MONOCYTES_41
359.6
MONOCYTES_42
358.5
MONOCYTES_43
358.4
MONOCYTES_44
354.3
MONOCYTES_45
353.5
MONOCYTES_46
353.4
MONOCYTES_47
353.3
MONOCYTES_48
351.6
MONOCYTES_49
346.9
MONOCYTES_50
346.7
MONOCYTES_51
345.3
MONOCYTES_52
344.3
MONOCYTES_53
340.6
MONOCYTES_54
338.3
MONOCYTES_55
338.1
MONOCYTES_56
335.9
MONOCYTES_57
334.6
MONOCYTES_58
333.9
MONOCYTES_59
333.1
MONOCYTES_60
332.2
MONOCYTES_61
331.2
MONOCYTES_62
331.2
MONOCYTES_63
329.9
MONOCYTES_64
329.8
MONOCYTES_65
329.4
MONOCYTES_66
328.5
MONOCYTES_67
322.8
MONOCYTES_68
319.4
MONOCYTES_69
318.6
MONOCYTES_70
318.4
MONOCYTES_71
318.2
MONOCYTES_72
316.4
MONOCYTES_73
316.0
MONOCYTES_74
315.8
MONOCYTES_75
315.6
MONOCYTES_76
307.3
MONOCYTES_77
307.0
MONOCYTES_78
303.9
MONOCYTES_79
303.9
MONOCYTES_80
302.7
MONOCYTES_81
300.2
MONOCYTES_82
296.6
MONOCYTES_83
296.6
MONOCYTES_84
296.1
MONOCYTES_85
295.4
MONOCYTES_86
290.5
MONOCYTES_87
286.4
MONOCYTES_88
284.6
MONOCYTES_89
280.0
MONOCYTES_90
273.0
MONOCYTES_91
258.0
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Non-classical monocyte TPM: 452.5
Samples: 90
Max TPM: 658.9
Min TPM: 292.4
M2_1
658.9
M2_2
653.5
M2_3
646.7
M2_4
642.2
M2_5
617.7
M2_6
610.7
M2_7
587.2
M2_8
569.5
M2_9
561.4
M2_10
559.8
M2_11
558.9
M2_12
557.9
M2_13
551.8
M2_14
551.7
M2_15
541.4
M2_16
538.0
M2_17
536.4
M2_18
535.4
M2_19
532.8
M2_20
532.7
M2_21
523.2
M2_22
513.8
M2_23
512.5
M2_24
512.4
M2_25
509.0
M2_26
495.7
M2_27
493.1
M2_28
482.5
M2_29
478.7
M2_30
478.6
M2_31
476.4
M2_32
472.7
M2_33
467.9
M2_34
467.3
M2_35
465.1
M2_36
462.1
M2_37
461.1
M2_38
459.8
M2_39
455.4
M2_40
454.1
M2_41
451.3
M2_42
448.6
M2_43
448.4
M2_44
445.9
M2_45
444.4
M2_46
442.9
M2_47
439.7
M2_48
439.5
M2_49
430.9
M2_50
430.4
M2_51
428.4
M2_52
428.4
M2_53
427.3
M2_54
424.5
M2_55
420.6
M2_56
416.1
M2_57
412.4
M2_58
411.3
M2_59
410.7
M2_60
409.7
M2_61
407.7
M2_62
405.2
M2_63
401.0
M2_64
400.1
M2_65
399.7
M2_66
398.4
M2_67
387.9
M2_68
387.4
M2_69
387.3
M2_70
383.2
M2_71
383.2
M2_72
381.4
M2_73
379.4
M2_74
376.6
M2_75
374.8
M2_76
367.2
M2_77
365.9
M2_78
362.9
M2_79
358.3
M2_80
357.8
M2_81
352.5
M2_82
352.3
M2_83
341.8
M2_84
331.0
M2_85
320.9
M2_86
320.5
M2_87
320.1
M2_88
317.8
M2_89
315.0
M2_90
292.4
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