MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.0 nTPM
HPA Brain:13.7 nTPM
GTEx:24.0 nTPM
FANTOM5:75.1 Scaled Tags Per Million
Pig:21.0 nTPM
Mouse:15.0 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.1
1870 Female, age 42, unknown 15.0
2411 Female, age 72, unknown 14.6
2019 Male, age 18, unknown 12.9
1830 Male, age 51, unknown 11.4
2666 Male, age 74, left hemisphere 10.6
1827 Male, age 72, unknown 10.5
1833 Male, age 53, unknown 9.9
2828 Female, age 72, unknown 9.3
2586 Male, age 75, left hemisphere 8.6
2219 Male, age 76, both hemispheres 8.4
Dorsal raphe nucleus
nTPM: 12.1
2750 Male, age 76, both hemispheres 14.6
2016 Female, age 72, unknown 12.3
2298 Female, age 72, unknown 11.9
1828 Male, age 53, unknown 11.1
2047 Male, age 72, unknown 10.6
Inferior colliculus
nTPM: 11.8
2097 Female, age 72, unknown 13.2
1890 Male, age 53, unknown 12.4
1848 Female, age 42, unknown 11.8
2849 Male, age 72, unknown 9.6
Median raphe nucleus
nTPM: 13.7
2220 Male, age 76, midline 13.7
Periaquaductal grey, anterior
nTPM: 10.4
2502 Female, age 75, unknown 11.8
1947 Male, age 18, unknown 10.6
1795 Male, age 51, unknown 8.8
Periaquaductal grey, dorsal
nTPM: 10.3
2850 Male, age 76, both hemispheres 10.5
1840 Male, age 53, unknown 10.4
2464 Female, age 72, unknown 10.4
1831 Male, age 72, unknown 9.7
Periaquaductal grey, lateral
nTPM: 9.9
2053 Male, age 18, unknown 11.5
2140 Male, age 76, both hemispheres 9.6
2272 Male, age 74, both hemispheres 8.6
Pretectal area
nTPM: 11.5
1817 Female, age 42, unknown 13.7
1815 Male, age 53, unknown 12.9
2316 Male, age 76, right hemisphere 12.9
2007 Male, age 72, unknown 12.6
2224 Female, age 72, unknown 11.9
1816 Male, age 51, unknown 11.8
1944 Female, age 72, unknown 11.3
2407 Male, age 75, both hemispheres 10.6
2273 Male, age 74, both hemispheres 10.3
2825 Male, age 18, unknown 10.0
2667 Female, age 75, unknown 9.0
Red nucleus
nTPM: 12.5
1821 Female, age 72, unknown 16.4
1904 Male, age 53, unknown 14.5
1954 Female, age 42, unknown 13.9
2503 Female, age 72, unknown 13.9
1865 Male, age 51, unknown 13.0
2785 Male, age 18, unknown 12.6
2823 Male, age 76, right hemisphere 12.5
2769 Male, age 72, unknown 12.3
2227 Male, age 72, unknown 11.9
2725 Female, age 75, unknown 11.4
2588 Male, age 74, left hemisphere 8.9
2584 Male, age 75, left hemisphere 8.7
Substantia nigra
nTPM: 13.3
2241 Male, age 72, unknown 17.0
2409 Female, age 72, unknown 16.0
2590 Female, age 75, unknown 15.3
1851 Male, age 51, unknown 14.0
1889 Female, age 72, unknown 13.2
1916 Female, age 42, unknown 13.1
1941 Male, age 53, unknown 12.5
2699 Male, age 18, unknown 11.3
2583 Male, age 75, right hemisphere 10.4
2665 Male, age 74, both hemispheres 9.7
Superior colliculus
nTPM: 11.3
1913 Female, age 42, unknown 12.9
1895 Male, age 76, right hemisphere 12.6
1995 Male, age 72, unknown 12.3
2587 Male, age 74, left hemisphere 11.7
2668 Female, age 75, unknown 11.7
2087 Female, age 72, unknown 11.4
1839 Male, age 51, unknown 11.3
2261 Male, age 18, unknown 10.3
1796 Male, age 53, unknown 10.0
2664 Male, age 75, both hemispheres 9.3
Ventral tegmental area
nTPM: 12.6
2218 Male, age 76, both hemispheres 13.8
1915 Female, age 42, unknown 12.8
2223 Female, age 72, unknown 12.6
2021 Male, age 53, unknown 12.4
1942 Male, age 51, unknown 12.0
2410 Female, age 72, unknown 11.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.0
Samples: 183

Max nTPM: 52.7
Min nTPM: 11.1
Std nTPM: 6.7
Median nTPM: 23.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 52.7
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 49.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 48.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 45.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 37.7
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 36.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 36.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 35.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 35.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 35.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 34.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 75.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.1
FF:10158-103A5 76 years, female 75.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.3
Samples: 4

Max nTPM: 27.7
Min nTPM: 11.2
Sample A Female 27.7
Sample B Female 17.3
Sample C Male 20.9
Sample D Male 11.2
Midbrain
nTPM: 20.5
Samples: 4

Max nTPM: 24.3
Min nTPM: 17.0
Sample A Female 17.0
Sample B Female 20.1
Sample C Male 24.3
Sample D Male 20.5
Periaqueductal gray
nTPM: 14.8
Samples: 3

Max nTPM: 16.7
Min nTPM: 13.8
Sample B Female 13.9
Sample C Male 16.7
Sample D Male 13.8
Superior colliculi
nTPM: 21.1
Samples: 4

Max nTPM: 24.7
Min nTPM: 17.8
Sample A Female 23.3
Sample B Female 18.4
Sample C Male 24.7
Sample D Male 17.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 15.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.0
Samples: 4

Max nTPM: 15.7
Min nTPM: 14.3
Sample A Male 14.5
Sample B Male 15.7
Sample C Female 15.4
Sample D Female 14.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
71656060 Antisense, RP_050927_03_E01, Mouse strain C57BL/6J (56 days, male) 1.7
71280907 Antisense, RP_050818_01_G12, Mouse strain C57BL/6J (56 days, male) 0.2

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