A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.2
nTPM
Monaco:
109.0
nTPM
Schmiedel:
33.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.2
HPA sample
nTPM
Memory B-cell nTPM: 31.1
Samples: 6
Max nTPM: 68.1
Min nTPM: 17.4
P10809_1017
24.7
P10809_1025
24.1
P10809_1044
68.1
P10809_1063
30.1
P10809_1092
22.4
P10809_1105
17.4
Naive B-cell nTPM: 33.2
Samples: 6
Max nTPM: 99.0
Min nTPM: 10.1
P10809_1011
10.1
P10809_1029
21.6
P10809_1048
99.0
P10809_1067
26.5
P10809_1091
23.8
P10809_1104
18.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
109.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 76.7
Samples: 4
Max nTPM: 90.1
Min nTPM: 57.8
RHH5310_R3677
87.0
RHH5218_R3590
71.9
RHH5247_R3619
90.1
RHH5276_R3648
57.8
Naive B-cell nTPM: 91.9
Samples: 4
Max nTPM: 123.5
Min nTPM: 49.5
RHH5308_R3675
88.4
RHH5216_R3588
123.5
RHH5245_R3617
49.5
RHH5274_R3646
106.3
Non-switched memory B-cell nTPM: 68.6
Samples: 4
Max nTPM: 82.1
Min nTPM: 52.7
RHH5309_R3676
82.1
RHH5217_R3589
52.7
RHH5246_R3618
77.1
RHH5275_R3647
62.6
Plasmablast nTPM: 109.0
Samples: 4
Max nTPM: 165.9
Min nTPM: 66.4
RHH5312_R3679
100.5
RHH5220_R3592
165.9
RHH5249_R3621
103.3
RHH5278_R3650
66.4
Switched memory B-cell nTPM: 83.0
Samples: 4
Max nTPM: 89.3
Min nTPM: 69.2
RHH5311_R3678
88.7
RHH5219_R3591
84.6
RHH5248_R3620
89.3
RHH5277_R3649
69.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.4
Schmiedel sample id
TPM
Naive B-cell TPM: 33.4
Samples: 91
Max TPM: 55.6
Min TPM: 19.8
B_CELL_NAIVE_1
55.6
B_CELL_NAIVE_2
53.0
B_CELL_NAIVE_3
50.5
B_CELL_NAIVE_4
48.9
B_CELL_NAIVE_5
48.2
B_CELL_NAIVE_6
46.2
B_CELL_NAIVE_7
46.1
B_CELL_NAIVE_8
46.1
B_CELL_NAIVE_9
42.9
B_CELL_NAIVE_10
42.7
B_CELL_NAIVE_11
41.5
B_CELL_NAIVE_12
41.4
B_CELL_NAIVE_13
41.1
B_CELL_NAIVE_14
39.3
B_CELL_NAIVE_15
38.6
B_CELL_NAIVE_16
38.5
B_CELL_NAIVE_17
38.3
B_CELL_NAIVE_18
38.3
B_CELL_NAIVE_19
37.6
B_CELL_NAIVE_20
36.8
B_CELL_NAIVE_21
36.5
B_CELL_NAIVE_22
36.4
B_CELL_NAIVE_23
36.3
B_CELL_NAIVE_24
36.1
B_CELL_NAIVE_25
35.9
B_CELL_NAIVE_26
35.6
B_CELL_NAIVE_27
35.4
B_CELL_NAIVE_28
35.4
B_CELL_NAIVE_29
35.3
B_CELL_NAIVE_30
34.8
B_CELL_NAIVE_31
34.7
B_CELL_NAIVE_32
34.7
B_CELL_NAIVE_33
34.6
B_CELL_NAIVE_34
34.6
B_CELL_NAIVE_35
34.5
B_CELL_NAIVE_36
33.9
B_CELL_NAIVE_37
33.7
B_CELL_NAIVE_38
33.4
B_CELL_NAIVE_39
33.3
B_CELL_NAIVE_40
33.3
B_CELL_NAIVE_41
33.0
B_CELL_NAIVE_42
32.8
B_CELL_NAIVE_43
32.4
B_CELL_NAIVE_44
32.3
B_CELL_NAIVE_45
32.3
B_CELL_NAIVE_46
32.2
B_CELL_NAIVE_47
32.0
B_CELL_NAIVE_48
31.9
B_CELL_NAIVE_49
31.8
B_CELL_NAIVE_50
31.8
B_CELL_NAIVE_51
31.7
B_CELL_NAIVE_52
31.5
B_CELL_NAIVE_53
31.4
B_CELL_NAIVE_54
31.0
B_CELL_NAIVE_55
30.9
B_CELL_NAIVE_56
30.4
B_CELL_NAIVE_57
30.2
B_CELL_NAIVE_58
29.9
B_CELL_NAIVE_59
29.8
B_CELL_NAIVE_60
29.8
B_CELL_NAIVE_61
29.7
B_CELL_NAIVE_62
29.7
B_CELL_NAIVE_63
29.6
B_CELL_NAIVE_64
28.9
B_CELL_NAIVE_65
28.8
B_CELL_NAIVE_66
28.7
B_CELL_NAIVE_67
28.7
B_CELL_NAIVE_68
28.5
B_CELL_NAIVE_69
28.4
B_CELL_NAIVE_70
28.4
B_CELL_NAIVE_71
28.4
B_CELL_NAIVE_72
28.3
B_CELL_NAIVE_73
28.2
B_CELL_NAIVE_74
28.1
B_CELL_NAIVE_75
27.9
B_CELL_NAIVE_76
27.8
B_CELL_NAIVE_77
27.3
B_CELL_NAIVE_78
27.3
B_CELL_NAIVE_79
27.1
B_CELL_NAIVE_80
27.0
B_CELL_NAIVE_81
26.9
B_CELL_NAIVE_82
26.2
B_CELL_NAIVE_83
26.2
B_CELL_NAIVE_84
26.2
B_CELL_NAIVE_85
26.1
B_CELL_NAIVE_86
25.8
B_CELL_NAIVE_87
25.8
B_CELL_NAIVE_88
24.5
B_CELL_NAIVE_89
24.4
B_CELL_NAIVE_90
22.1
B_CELL_NAIVE_91
19.8
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