A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
52.7
nTPM
Monaco:
165.0
nTPM
Schmiedel:
43.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.7
HPA sample
nTPM
Classical monocyte nTPM: 41.8
Samples: 6
Max nTPM: 79.6
Min nTPM: 17.7
P10809_1003
27.8
P10809_1020
55.3
P10809_1039
79.6
P10809_1058
38.8
P10809_1080
31.6
P10809_1107
17.7
Intermediate monocyte nTPM: 52.7
Samples: 6
Max nTPM: 85.5
Min nTPM: 23.7
P10809_1004
41.6
P10809_1023
74.2
P10809_1042
85.5
P10809_1061
58.5
P10809_1081
32.5
P10809_1108
23.7
Non-classical monocyte nTPM: 42.9
Samples: 5
Max nTPM: 67.7
Min nTPM: 31.5
P10809_1005
38.2
P10809_1053
67.7
P10809_1072
36.1
P10809_1082
40.8
P10809_1109
31.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
165.0
Monaco sample
nTPM
Classical monocyte nTPM: 165.0
Samples: 4
Max nTPM: 184.6
Min nTPM: 145.2
RHH5313_R3680
184.6
RHH5221_R3593
162.4
RHH5250_R3622
145.2
RHH5279_R3651
167.6
Intermediate monocyte nTPM: 144.2
Samples: 4
Max nTPM: 162.4
Min nTPM: 122.8
RHH5314_R3681
156.8
RHH5222_R3594
122.8
RHH5251_R3623
134.7
RHH5280_R3652
162.4
Non-classical monocyte nTPM: 148.0
Samples: 4
Max nTPM: 191.3
Min nTPM: 114.3
RHH5315_R3682
162.6
RHH5223_R3595
114.3
RHH5252_R3624
123.9
RHH5281_R3653
191.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.0
Schmiedel sample id
TPM
Classical monocyte TPM: 32.4
Samples: 91
Max TPM: 47.9
Min TPM: 20.2
MONOCYTES_1
47.9
MONOCYTES_2
47.0
MONOCYTES_3
45.4
MONOCYTES_4
44.4
MONOCYTES_5
43.2
MONOCYTES_6
42.5
MONOCYTES_7
41.1
MONOCYTES_8
40.6
MONOCYTES_9
40.5
MONOCYTES_10
40.1
MONOCYTES_11
40.0
MONOCYTES_12
39.6
MONOCYTES_13
39.5
MONOCYTES_14
39.5
MONOCYTES_15
39.5
MONOCYTES_16
39.0
MONOCYTES_17
38.6
MONOCYTES_18
37.1
MONOCYTES_19
37.0
MONOCYTES_20
37.0
MONOCYTES_21
36.9
MONOCYTES_22
36.7
MONOCYTES_23
36.7
MONOCYTES_24
36.6
MONOCYTES_25
36.2
MONOCYTES_26
36.0
MONOCYTES_27
35.4
MONOCYTES_28
35.4
MONOCYTES_29
35.3
MONOCYTES_30
35.2
MONOCYTES_31
35.2
MONOCYTES_32
35.0
MONOCYTES_33
34.8
MONOCYTES_34
34.4
MONOCYTES_35
34.3
MONOCYTES_36
33.8
MONOCYTES_37
33.8
MONOCYTES_38
33.7
MONOCYTES_39
33.7
MONOCYTES_40
33.1
MONOCYTES_41
32.6
MONOCYTES_42
32.3
MONOCYTES_43
32.1
MONOCYTES_44
31.5
MONOCYTES_45
31.4
MONOCYTES_46
31.4
MONOCYTES_47
31.3
MONOCYTES_48
31.2
MONOCYTES_49
30.7
MONOCYTES_50
30.6
MONOCYTES_51
30.5
MONOCYTES_52
30.4
MONOCYTES_53
30.2
MONOCYTES_54
30.2
MONOCYTES_55
30.1
MONOCYTES_56
29.9
MONOCYTES_57
29.8
MONOCYTES_58
29.8
MONOCYTES_59
29.8
MONOCYTES_60
29.8
MONOCYTES_61
29.2
MONOCYTES_62
29.1
MONOCYTES_63
28.8
MONOCYTES_64
28.6
MONOCYTES_65
28.5
MONOCYTES_66
28.4
MONOCYTES_67
28.3
MONOCYTES_68
28.2
MONOCYTES_69
28.2
MONOCYTES_70
28.0
MONOCYTES_71
27.8
MONOCYTES_72
27.7
MONOCYTES_73
27.6
MONOCYTES_74
27.4
MONOCYTES_75
27.2
MONOCYTES_76
26.8
MONOCYTES_77
26.6
MONOCYTES_78
26.2
MONOCYTES_79
26.0
MONOCYTES_80
25.3
MONOCYTES_81
25.1
MONOCYTES_82
24.9
MONOCYTES_83
24.9
MONOCYTES_84
24.8
MONOCYTES_85
24.8
MONOCYTES_86
24.2
MONOCYTES_87
24.1
MONOCYTES_88
24.0
MONOCYTES_89
23.3
MONOCYTES_90
20.3
MONOCYTES_91
20.2
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Non-classical monocyte TPM: 43.0
Samples: 90
Max TPM: 69.0
Min TPM: 20.9
M2_1
69.0
M2_2
66.7
M2_3
66.3
M2_4
64.6
M2_5
64.3
M2_6
63.2
M2_7
60.4
M2_8
58.8
M2_9
57.3
M2_10
54.3
M2_11
52.7
M2_12
52.3
M2_13
51.9
M2_14
50.8
M2_15
50.6
M2_16
50.5
M2_17
50.5
M2_18
50.5
M2_19
50.3
M2_20
50.1
M2_21
49.6
M2_22
49.0
M2_23
49.0
M2_24
48.3
M2_25
48.1
M2_26
48.0
M2_27
47.9
M2_28
47.8
M2_29
46.8
M2_30
46.6
M2_31
46.5
M2_32
46.3
M2_33
45.8
M2_34
45.0
M2_35
45.0
M2_36
44.5
M2_37
44.3
M2_38
44.2
M2_39
43.7
M2_40
43.5
M2_41
43.4
M2_42
43.1
M2_43
42.4
M2_44
42.3
M2_45
42.2
M2_46
41.4
M2_47
41.2
M2_48
40.5
M2_49
40.1
M2_50
39.9
M2_51
39.6
M2_52
39.5
M2_53
39.4
M2_54
39.3
M2_55
39.1
M2_56
39.0
M2_57
38.5
M2_58
38.4
M2_59
37.8
M2_60
37.6
M2_61
37.5
M2_62
37.0
M2_63
36.3
M2_64
36.3
M2_65
36.2
M2_66
36.2
M2_67
36.2
M2_68
36.0
M2_69
35.8
M2_70
35.5
M2_71
35.4
M2_72
34.9
M2_73
34.7
M2_74
33.9
M2_75
33.9
M2_76
33.7
M2_77
33.1
M2_78
33.1
M2_79
33.0
M2_80
32.8
M2_81
32.8
M2_82
32.7
M2_83
32.4
M2_84
32.3
M2_85
32.2
M2_86
32.2
M2_87
30.4
M2_88
29.1
M2_89
26.6
M2_90
20.9
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