A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.3
nTPM
Monaco:
8.2
nTPM
Schmiedel:
35.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.3
HPA sample
nTPM
NK-cell nTPM: 2.3
Samples: 6
Max nTPM: 6.7
Min nTPM: 0.3
P10809_1013
0.6
P10809_1033
2.7
P10809_1052
2.6
P10809_1071
0.3
P10809_1093
6.7
P10809_1103
0.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.2
Monaco sample
nTPM
NK-cell nTPM: 8.1
Samples: 4
Max nTPM: 8.5
Min nTPM: 7.4
RHH5316_R3683
7.4
RHH5224_R3596
8.5
RHH5253_R3625
8.5
RHH5282_R3654
8.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.0
Schmiedel sample id
TPM
NK-cell TPM: 35.0
Samples: 90
Max TPM: 59.3
Min TPM: 14.6
NK_1
59.3
NK_2
54.4
NK_3
51.7
NK_4
51.4
NK_5
51.1
NK_6
50.1
NK_7
47.5
NK_8
46.6
NK_9
46.6
NK_10
46.3
NK_11
46.1
NK_12
46.0
NK_13
45.7
NK_14
45.3
NK_15
45.3
NK_16
44.8
NK_17
44.6
NK_18
44.1
NK_19
43.9
NK_20
43.3
NK_21
42.6
NK_22
41.6
NK_23
41.5
NK_24
41.0
NK_25
40.7
NK_26
40.2
NK_27
40.2
NK_28
40.1
NK_29
40.1
NK_30
40.0
NK_31
39.9
NK_32
39.7
NK_33
39.6
NK_34
39.4
NK_35
38.9
NK_36
38.9
NK_37
38.8
NK_38
37.1
NK_39
37.0
NK_40
36.9
NK_41
36.9
NK_42
36.6
NK_43
36.4
NK_44
36.0
NK_45
35.9
NK_46
35.7
NK_47
35.6
NK_48
35.3
NK_49
34.4
NK_50
33.6
NK_51
33.5
NK_52
33.1
NK_53
32.8
NK_54
32.7
NK_55
32.6
NK_56
32.0
NK_57
31.7
NK_58
31.6
NK_59
31.5
NK_60
31.4
NK_61
31.3
NK_62
29.1
NK_63
29.1
NK_64
28.9
NK_65
28.4
NK_66
28.3
NK_67
28.0
NK_68
27.8
NK_69
27.7
NK_70
26.9
NK_71
26.8
NK_72
26.6
NK_73
26.3
NK_74
25.9
NK_75
25.3
NK_76
24.4
NK_77
24.3
NK_78
24.0
NK_79
23.4
NK_80
22.1
NK_81
21.6
NK_82
21.5
NK_83
20.0
NK_84
20.0
NK_85
19.8
NK_86
18.9
NK_87
18.1
NK_88
17.3
NK_89
16.2
NK_90
14.6
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
