A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.6
nTPM
Monaco:
12.8
nTPM
Schmiedel:
24.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.6
HPA sample
nTPM
Classical monocyte nTPM: 1.1
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.3
P10809_1003
1.7
P10809_1020
1.2
P10809_1039
1.7
P10809_1058
0.7
P10809_1080
0.3
P10809_1107
0.8
Intermediate monocyte nTPM: 2.6
Samples: 6
Max nTPM: 4.3
Min nTPM: 1.7
P10809_1004
1.7
P10809_1023
2.4
P10809_1042
3.4
P10809_1061
4.3
P10809_1081
2.1
P10809_1108
1.8
Non-classical monocyte nTPM: 1.8
Samples: 5
Max nTPM: 4.3
Min nTPM: 0.8
P10809_1005
1.1
P10809_1053
0.8
P10809_1072
4.3
P10809_1082
1.5
P10809_1109
1.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.8
Monaco sample
nTPM
Classical monocyte nTPM: 10.1
Samples: 4
Max nTPM: 12.5
Min nTPM: 7.1
RHH5313_R3680
12.5
RHH5221_R3593
8.6
RHH5250_R3622
7.1
RHH5279_R3651
12.0
Intermediate monocyte nTPM: 10.3
Samples: 4
Max nTPM: 15.7
Min nTPM: 7.8
RHH5314_R3681
8.5
RHH5222_R3594
15.7
RHH5251_R3623
9.1
RHH5280_R3652
7.8
Non-classical monocyte nTPM: 12.9
Samples: 4
Max nTPM: 19.3
Min nTPM: 6.5
RHH5315_R3682
19.3
RHH5223_R3595
12.7
RHH5252_R3624
12.9
RHH5281_R3653
6.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.8
Schmiedel sample id
TPM
Classical monocyte TPM: 18.7
Samples: 91
Max TPM: 24.5
Min TPM: 8.9
MONOCYTES_1
24.5
MONOCYTES_2
23.6
MONOCYTES_3
23.5
MONOCYTES_4
23.1
MONOCYTES_5
23.1
MONOCYTES_6
23.0
MONOCYTES_7
23.0
MONOCYTES_8
22.8
MONOCYTES_9
22.8
MONOCYTES_10
22.8
MONOCYTES_11
22.6
MONOCYTES_12
22.6
MONOCYTES_13
22.5
MONOCYTES_14
22.3
MONOCYTES_15
22.3
MONOCYTES_16
22.2
MONOCYTES_17
22.2
MONOCYTES_18
22.0
MONOCYTES_19
21.9
MONOCYTES_20
21.8
MONOCYTES_21
21.6
MONOCYTES_22
21.6
MONOCYTES_23
21.4
MONOCYTES_24
21.3
MONOCYTES_25
21.3
MONOCYTES_26
21.1
MONOCYTES_27
21.0
MONOCYTES_28
20.9
MONOCYTES_29
20.9
MONOCYTES_30
20.8
MONOCYTES_31
20.8
MONOCYTES_32
20.7
MONOCYTES_33
20.5
MONOCYTES_34
20.5
MONOCYTES_35
20.3
MONOCYTES_36
20.1
MONOCYTES_37
19.9
MONOCYTES_38
19.8
MONOCYTES_39
19.7
MONOCYTES_40
19.4
MONOCYTES_41
19.4
MONOCYTES_42
19.3
MONOCYTES_43
19.2
MONOCYTES_44
18.7
MONOCYTES_45
18.6
MONOCYTES_46
18.6
MONOCYTES_47
18.6
MONOCYTES_48
18.6
MONOCYTES_49
18.5
MONOCYTES_50
18.3
MONOCYTES_51
18.2
MONOCYTES_52
18.2
MONOCYTES_53
18.1
MONOCYTES_54
18.0
MONOCYTES_55
18.0
MONOCYTES_56
18.0
MONOCYTES_57
17.7
MONOCYTES_58
17.4
MONOCYTES_59
17.4
MONOCYTES_60
17.4
MONOCYTES_61
17.3
MONOCYTES_62
17.3
MONOCYTES_63
17.2
MONOCYTES_64
17.2
MONOCYTES_65
17.1
MONOCYTES_66
17.1
MONOCYTES_67
16.8
MONOCYTES_68
16.7
MONOCYTES_69
16.6
MONOCYTES_70
16.5
MONOCYTES_71
16.5
MONOCYTES_72
16.3
MONOCYTES_73
16.2
MONOCYTES_74
16.1
MONOCYTES_75
16.1
MONOCYTES_76
16.0
MONOCYTES_77
15.2
MONOCYTES_78
15.1
MONOCYTES_79
15.0
MONOCYTES_80
14.8
MONOCYTES_81
14.4
MONOCYTES_82
14.2
MONOCYTES_83
13.3
MONOCYTES_84
13.2
MONOCYTES_85
13.0
MONOCYTES_86
12.8
MONOCYTES_87
12.7
MONOCYTES_88
12.0
MONOCYTES_89
11.7
MONOCYTES_90
11.3
MONOCYTES_91
8.9
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Non-classical monocyte TPM: 24.8
Samples: 90
Max TPM: 35.6
Min TPM: 10.6
M2_1
35.6
M2_2
35.6
M2_3
33.8
M2_4
33.8
M2_5
33.7
M2_6
33.5
M2_7
32.9
M2_8
32.9
M2_9
32.6
M2_10
32.4
M2_11
32.1
M2_12
31.9
M2_13
31.8
M2_14
31.6
M2_15
31.3
M2_16
31.2
M2_17
31.1
M2_18
31.0
M2_19
30.9
M2_20
30.6
M2_21
30.3
M2_22
29.7
M2_23
29.6
M2_24
29.5
M2_25
29.3
M2_26
28.7
M2_27
28.7
M2_28
27.9
M2_29
27.7
M2_30
27.5
M2_31
27.4
M2_32
27.4
M2_33
27.4
M2_34
27.2
M2_35
27.0
M2_36
26.9
M2_37
26.4
M2_38
26.3
M2_39
26.0
M2_40
25.8
M2_41
25.7
M2_42
25.7
M2_43
25.7
M2_44
25.2
M2_45
25.0
M2_46
24.9
M2_47
24.8
M2_48
24.7
M2_49
24.4
M2_50
24.3
M2_51
24.2
M2_52
24.1
M2_53
24.0
M2_54
23.7
M2_55
23.5
M2_56
23.3
M2_57
23.1
M2_58
23.0
M2_59
22.3
M2_60
22.3
M2_61
22.3
M2_62
22.2
M2_63
22.2
M2_64
22.0
M2_65
21.5
M2_66
21.5
M2_67
21.3
M2_68
20.7
M2_69
20.5
M2_70
20.1
M2_71
19.5
M2_72
19.5
M2_73
19.3
M2_74
18.6
M2_75
18.1
M2_76
17.7
M2_77
17.6
M2_78
17.6
M2_79
17.4
M2_80
16.5
M2_81
16.2
M2_82
16.2
M2_83
15.8
M2_84
15.7
M2_85
14.9
M2_86
14.4
M2_87
13.2
M2_88
13.1
M2_89
12.0
M2_90
10.6
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