A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.5
nTPM
Monaco:
16.1
nTPM
Schmiedel:
82.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.5
HPA sample
nTPM
NK-cell nTPM: 3.5
Samples: 6
Max nTPM: 5.2
Min nTPM: 1.9
P10809_1013
2.9
P10809_1033
1.9
P10809_1052
3.9
P10809_1071
3.2
P10809_1093
4.0
P10809_1103
5.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.1
Monaco sample
nTPM
NK-cell nTPM: 16.1
Samples: 4
Max nTPM: 25.9
Min nTPM: 5.8
RHH5316_R3683
13.8
RHH5224_R3596
5.8
RHH5253_R3625
25.9
RHH5282_R3654
19.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.9
Schmiedel sample id
TPM
NK-cell TPM: 82.8
Samples: 90
Max TPM: 124.0
Min TPM: 40.2
NK_1
124.0
NK_2
122.4
NK_3
117.1
NK_4
116.0
NK_5
113.5
NK_6
113.4
NK_7
102.0
NK_8
101.9
NK_9
101.2
NK_10
100.9
NK_11
100.3
NK_12
97.7
NK_13
97.4
NK_14
97.3
NK_15
96.6
NK_16
96.2
NK_17
95.6
NK_18
95.3
NK_19
95.1
NK_20
94.9
NK_21
94.8
NK_22
94.7
NK_23
94.0
NK_24
92.5
NK_25
92.1
NK_26
91.8
NK_27
91.1
NK_28
91.1
NK_29
89.5
NK_30
89.4
NK_31
88.5
NK_32
88.4
NK_33
85.9
NK_34
85.2
NK_35
85.1
NK_36
85.0
NK_37
84.8
NK_38
83.1
NK_39
82.4
NK_40
82.0
NK_41
81.2
NK_42
80.9
NK_43
80.6
NK_44
80.5
NK_45
80.3
NK_46
79.9
NK_47
79.9
NK_48
79.7
NK_49
79.5
NK_50
79.2
NK_51
78.6
NK_52
78.1
NK_53
77.4
NK_54
77.3
NK_55
77.2
NK_56
76.9
NK_57
76.8
NK_58
76.5
NK_59
76.1
NK_60
76.1
NK_61
75.7
NK_62
75.1
NK_63
75.0
NK_64
74.4
NK_65
73.7
NK_66
73.2
NK_67
72.7
NK_68
72.7
NK_69
72.3
NK_70
71.5
NK_71
70.8
NK_72
70.0
NK_73
69.3
NK_74
69.1
NK_75
68.3
NK_76
68.3
NK_77
67.4
NK_78
67.1
NK_79
67.1
NK_80
66.1
NK_81
65.8
NK_82
65.4
NK_83
64.9
NK_84
64.8
NK_85
64.6
NK_86
64.2
NK_87
64.1
NK_88
60.2
NK_89
59.5
NK_90
40.2
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