A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.9
nTPM
Monaco:
20.7
nTPM
Schmiedel:
52.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.9
HPA sample
nTPM
Classical monocyte nTPM: 3.9
Samples: 6
Max nTPM: 4.6
Min nTPM: 3.2
P10809_1003
3.2
P10809_1020
4.0
P10809_1039
4.6
P10809_1058
3.7
P10809_1080
4.3
P10809_1107
3.4
Intermediate monocyte nTPM: 2.7
Samples: 6
Max nTPM: 3.8
Min nTPM: 0.9
P10809_1004
3.1
P10809_1023
0.9
P10809_1042
3.0
P10809_1061
3.4
P10809_1081
2.2
P10809_1108
3.8
Non-classical monocyte nTPM: 2.5
Samples: 5
Max nTPM: 3.3
Min nTPM: 0.5
P10809_1005
2.9
P10809_1053
2.8
P10809_1072
0.5
P10809_1082
2.9
P10809_1109
3.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.7
Monaco sample
nTPM
Classical monocyte nTPM: 17.4
Samples: 4
Max nTPM: 18.9
Min nTPM: 14.6
RHH5313_R3680
17.8
RHH5221_R3593
14.6
RHH5250_R3622
18.9
RHH5279_R3651
18.1
Intermediate monocyte nTPM: 20.7
Samples: 4
Max nTPM: 25.6
Min nTPM: 18.2
RHH5314_R3681
18.2
RHH5222_R3594
18.2
RHH5251_R3623
20.6
RHH5280_R3652
25.6
Non-classical monocyte nTPM: 17.0
Samples: 4
Max nTPM: 23.5
Min nTPM: 6.1
RHH5315_R3682
23.3
RHH5223_R3595
6.1
RHH5252_R3624
15.1
RHH5281_R3653
23.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.2
Schmiedel sample id
TPM
Classical monocyte TPM: 49.6
Samples: 91
Max TPM: 60.8
Min TPM: 39.4
MONOCYTES_1
60.8
MONOCYTES_2
60.2
MONOCYTES_3
59.5
MONOCYTES_4
58.4
MONOCYTES_5
57.6
MONOCYTES_6
57.5
MONOCYTES_7
57.5
MONOCYTES_8
57.5
MONOCYTES_9
57.4
MONOCYTES_10
57.2
MONOCYTES_11
56.9
MONOCYTES_12
56.6
MONOCYTES_13
56.6
MONOCYTES_14
56.5
MONOCYTES_15
55.2
MONOCYTES_16
54.5
MONOCYTES_17
54.4
MONOCYTES_18
54.2
MONOCYTES_19
54.2
MONOCYTES_20
54.1
MONOCYTES_21
53.5
MONOCYTES_22
53.5
MONOCYTES_23
53.0
MONOCYTES_24
53.0
MONOCYTES_25
52.8
MONOCYTES_26
52.7
MONOCYTES_27
52.7
MONOCYTES_28
52.5
MONOCYTES_29
52.4
MONOCYTES_30
52.1
MONOCYTES_31
51.9
MONOCYTES_32
51.1
MONOCYTES_33
51.0
MONOCYTES_34
50.4
MONOCYTES_35
50.4
MONOCYTES_36
50.3
MONOCYTES_37
50.2
MONOCYTES_38
50.1
MONOCYTES_39
49.8
MONOCYTES_40
49.8
MONOCYTES_41
49.7
MONOCYTES_42
49.7
MONOCYTES_43
49.6
MONOCYTES_44
49.5
MONOCYTES_45
49.5
MONOCYTES_46
49.0
MONOCYTES_47
48.9
MONOCYTES_48
48.9
MONOCYTES_49
48.8
MONOCYTES_50
48.5
MONOCYTES_51
48.4
MONOCYTES_52
48.1
MONOCYTES_53
48.0
MONOCYTES_54
47.6
MONOCYTES_55
47.4
MONOCYTES_56
47.4
MONOCYTES_57
47.3
MONOCYTES_58
47.3
MONOCYTES_59
47.1
MONOCYTES_60
47.1
MONOCYTES_61
46.9
MONOCYTES_62
46.7
MONOCYTES_63
46.7
MONOCYTES_64
46.5
MONOCYTES_65
46.4
MONOCYTES_66
46.1
MONOCYTES_67
46.0
MONOCYTES_68
45.8
MONOCYTES_69
45.5
MONOCYTES_70
45.2
MONOCYTES_71
45.2
MONOCYTES_72
45.2
MONOCYTES_73
45.1
MONOCYTES_74
45.0
MONOCYTES_75
44.9
MONOCYTES_76
44.8
MONOCYTES_77
44.8
MONOCYTES_78
44.7
MONOCYTES_79
44.7
MONOCYTES_80
44.6
MONOCYTES_81
44.5
MONOCYTES_82
43.9
MONOCYTES_83
43.8
MONOCYTES_84
43.5
MONOCYTES_85
43.3
MONOCYTES_86
42.8
MONOCYTES_87
42.7
MONOCYTES_88
42.1
MONOCYTES_89
41.5
MONOCYTES_90
40.9
MONOCYTES_91
39.4
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Non-classical monocyte TPM: 52.2
Samples: 90
Max TPM: 74.5
Min TPM: 34.5
M2_1
74.5
M2_2
68.7
M2_3
67.7
M2_4
65.1
M2_5
64.0
M2_6
63.8
M2_7
63.3
M2_8
63.1
M2_9
62.9
M2_10
62.8
M2_11
62.2
M2_12
62.1
M2_13
61.5
M2_14
60.6
M2_15
60.3
M2_16
59.8
M2_17
59.7
M2_18
59.2
M2_19
59.2
M2_20
58.9
M2_21
58.9
M2_22
58.5
M2_23
58.1
M2_24
57.3
M2_25
56.7
M2_26
56.6
M2_27
56.5
M2_28
56.5
M2_29
56.4
M2_30
55.1
M2_31
54.9
M2_32
54.8
M2_33
54.6
M2_34
54.2
M2_35
54.2
M2_36
54.0
M2_37
53.9
M2_38
53.8
M2_39
53.5
M2_40
53.4
M2_41
53.3
M2_42
53.3
M2_43
53.0
M2_44
52.7
M2_45
52.6
M2_46
52.5
M2_47
52.1
M2_48
52.0
M2_49
51.7
M2_50
51.7
M2_51
51.3
M2_52
51.0
M2_53
50.9
M2_54
50.9
M2_55
50.8
M2_56
50.2
M2_57
49.7
M2_58
49.3
M2_59
49.2
M2_60
48.6
M2_61
48.2
M2_62
48.0
M2_63
47.1
M2_64
46.6
M2_65
46.5
M2_66
45.7
M2_67
45.4
M2_68
45.4
M2_69
45.1
M2_70
44.7
M2_71
44.5
M2_72
44.5
M2_73
44.3
M2_74
44.1
M2_75
44.1
M2_76
43.9
M2_77
43.8
M2_78
43.7
M2_79
43.5
M2_80
43.1
M2_81
43.1
M2_82
43.0
M2_83
42.9
M2_84
41.8
M2_85
41.1
M2_86
40.5
M2_87
38.6
M2_88
37.1
M2_89
35.9
M2_90
34.5
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