MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.4 nTPM
HPA Brain:30.9 nTPM
GTEx:16.4 nTPM
FANTOM5:33.8 Scaled Tags Per Million
Pig:1.6 nTPM
Mouse:22.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.6
2019 Male, age 18, unknown 27.8
2411 Female, age 72, unknown 27.8
2666 Male, age 74, left hemisphere 27.7
2586 Male, age 75, left hemisphere 26.8
1827 Male, age 72, unknown 26.1
1833 Male, age 53, unknown 25.6
2828 Female, age 72, unknown 24.4
1830 Male, age 51, unknown 24.0
1870 Female, age 42, unknown 23.9
2219 Male, age 76, both hemispheres 22.3
Dorsal raphe nucleus
nTPM: 25.3
1828 Male, age 53, unknown 26.8
2047 Male, age 72, unknown 25.8
2750 Male, age 76, both hemispheres 25.3
2298 Female, age 72, unknown 24.5
2016 Female, age 72, unknown 24.2
Inferior colliculus
nTPM: 23.8
2097 Female, age 72, unknown 26.5
1890 Male, age 53, unknown 25.1
2849 Male, age 72, unknown 22.1
1848 Female, age 42, unknown 21.4
Median raphe nucleus
nTPM: 27.5
2220 Male, age 76, midline 27.5
Periaquaductal grey, anterior
nTPM: 27.0
1947 Male, age 18, unknown 28.4
1795 Male, age 51, unknown 26.6
2502 Female, age 75, unknown 25.9
Periaquaductal grey, dorsal
nTPM: 24.8
2850 Male, age 76, both hemispheres 26.6
1831 Male, age 72, unknown 25.0
1840 Male, age 53, unknown 24.1
2464 Female, age 72, unknown 23.7
Periaquaductal grey, lateral
nTPM: 22.1
2140 Male, age 76, both hemispheres 23.7
2272 Male, age 74, both hemispheres 21.6
2053 Male, age 18, unknown 20.9
Pretectal area
nTPM: 26.8
1817 Female, age 42, unknown 31.4
2007 Male, age 72, unknown 29.8
1815 Male, age 53, unknown 29.1
1944 Female, age 72, unknown 28.4
1816 Male, age 51, unknown 27.7
2667 Female, age 75, unknown 26.6
2407 Male, age 75, both hemispheres 25.0
2224 Female, age 72, unknown 24.7
2316 Male, age 76, right hemisphere 24.5
2825 Male, age 18, unknown 24.0
2273 Male, age 74, both hemispheres 23.3
Red nucleus
nTPM: 25.5
1821 Female, age 72, unknown 31.1
2785 Male, age 18, unknown 28.0
1865 Male, age 51, unknown 26.0
1904 Male, age 53, unknown 25.7
2725 Female, age 75, unknown 25.7
2823 Male, age 76, right hemisphere 25.2
2503 Female, age 72, unknown 24.9
1954 Female, age 42, unknown 24.8
2227 Male, age 72, unknown 24.1
2769 Male, age 72, unknown 23.9
2584 Male, age 75, left hemisphere 23.8
2588 Male, age 74, left hemisphere 23.1
Substantia nigra
nTPM: 30.9
1916 Female, age 42, unknown 45.1
1851 Male, age 51, unknown 36.8
2241 Male, age 72, unknown 35.5
2409 Female, age 72, unknown 32.3
1941 Male, age 53, unknown 28.2
1889 Female, age 72, unknown 27.5
2699 Male, age 18, unknown 27.0
2583 Male, age 75, right hemisphere 26.9
2665 Male, age 74, both hemispheres 26.8
2590 Female, age 75, unknown 23.5
Superior colliculus
nTPM: 26.5
2668 Female, age 75, unknown 35.2
1796 Male, age 53, unknown 27.7
2261 Male, age 18, unknown 27.5
2664 Male, age 75, both hemispheres 27.2
2087 Female, age 72, unknown 27.0
1913 Female, age 42, unknown 25.6
1895 Male, age 76, right hemisphere 24.3
2587 Male, age 74, left hemisphere 23.8
1839 Male, age 51, unknown 23.7
1995 Male, age 72, unknown 23.2
Ventral tegmental area
nTPM: 28.2
1915 Female, age 42, unknown 34.7
2410 Female, age 72, unknown 30.4
2218 Male, age 76, both hemispheres 28.6
1942 Male, age 51, unknown 26.1
2223 Female, age 72, unknown 25.6
2021 Male, age 53, unknown 23.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.4
Samples: 183

Max nTPM: 29.7
Min nTPM: 11.8
Std nTPM: 2.5
Median nTPM: 15.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 29.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 26.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 25.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 24.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 23.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 21.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 21.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 21.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 21.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 21.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 20.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.8
FF:10158-103A5 76 years, female 33.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.8
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.9
Sample C Male 1.5
Sample D Male 0.6
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 2.9
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.6
Sample C Male 2.4
Sample D Male 2.9
Periaqueductal gray
nTPM: 1.0
Samples: 3

Max nTPM: 2.1
Min nTPM: 0.3
Sample B Female 2.1
Sample C Male 0.6
Sample D Male 0.3
Superior colliculi
nTPM: 1.5
Samples: 4

Max nTPM: 3.6
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 3.6
Sample C Male 0.8
Sample D Male 1.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 23.8
Min nTPM: 20.8
Sample A Male 20.8
Sample B Male 22.1
Sample C Female 23.8
Sample D Female 22.5

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