A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.3
nTPM
Monaco:
101.7
nTPM
Schmiedel:
44.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.3
HPA sample
nTPM
NK-cell nTPM: 29.3
Samples: 6
Max nTPM: 32.9
Min nTPM: 23.5
P10809_1013
25.2
P10809_1033
32.8
P10809_1052
32.1
P10809_1071
23.5
P10809_1093
32.9
P10809_1103
29.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.7
Monaco sample
nTPM
NK-cell nTPM: 101.7
Samples: 4
Max nTPM: 116.2
Min nTPM: 81.8
RHH5316_R3683
113.9
RHH5224_R3596
116.2
RHH5253_R3625
94.9
RHH5282_R3654
81.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.1
Schmiedel sample id
TPM
NK-cell TPM: 44.1
Samples: 90
Max TPM: 56.7
Min TPM: 29.7
NK_1
56.7
NK_2
55.7
NK_3
54.4
NK_4
53.5
NK_5
53.4
NK_6
52.1
NK_7
51.3
NK_8
50.5
NK_9
50.2
NK_10
49.9
NK_11
49.7
NK_12
49.4
NK_13
49.4
NK_14
49.3
NK_15
49.0
NK_16
49.0
NK_17
48.4
NK_18
48.1
NK_19
48.0
NK_20
48.0
NK_21
47.9
NK_22
47.8
NK_23
47.7
NK_24
47.3
NK_25
47.3
NK_26
47.2
NK_27
47.1
NK_28
47.1
NK_29
46.9
NK_30
46.3
NK_31
46.2
NK_32
46.1
NK_33
46.1
NK_34
45.7
NK_35
45.5
NK_36
45.4
NK_37
45.1
NK_38
44.9
NK_39
44.7
NK_40
44.4
NK_41
44.4
NK_42
44.1
NK_43
44.1
NK_44
44.0
NK_45
43.9
NK_46
43.8
NK_47
43.3
NK_48
43.3
NK_49
43.2
NK_50
43.2
NK_51
43.2
NK_52
43.1
NK_53
42.8
NK_54
42.8
NK_55
42.7
NK_56
42.6
NK_57
42.5
NK_58
42.3
NK_59
42.0
NK_60
42.0
NK_61
41.7
NK_62
41.6
NK_63
41.5
NK_64
41.4
NK_65
41.3
NK_66
41.0
NK_67
40.8
NK_68
40.1
NK_69
40.1
NK_70
40.0
NK_71
39.9
NK_72
39.8
NK_73
39.7
NK_74
39.7
NK_75
39.5
NK_76
39.0
NK_77
38.9
NK_78
38.9
NK_79
38.9
NK_80
38.7
NK_81
38.4
NK_82
38.4
NK_83
38.0
NK_84
37.6
NK_85
37.5
NK_86
37.5
NK_87
35.5
NK_88
35.0
NK_89
34.6
NK_90
29.7
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