A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.3
nTPM
Monaco:
106.1
nTPM
Schmiedel:
42.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.3
HPA sample
nTPM
Classical monocyte nTPM: 27.5
Samples: 6
Max nTPM: 34.7
Min nTPM: 23.5
P10809_1003
29.0
P10809_1020
27.0
P10809_1039
26.4
P10809_1058
24.6
P10809_1080
34.7
P10809_1107
23.5
Intermediate monocyte nTPM: 29.3
Samples: 6
Max nTPM: 45.5
Min nTPM: 19.5
P10809_1004
28.2
P10809_1023
31.2
P10809_1042
45.5
P10809_1061
27.0
P10809_1081
24.4
P10809_1108
19.5
Non-classical monocyte nTPM: 27.7
Samples: 5
Max nTPM: 36.9
Min nTPM: 21.3
P10809_1005
27.2
P10809_1053
36.9
P10809_1072
29.1
P10809_1082
21.3
P10809_1109
23.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
106.1
Monaco sample
nTPM
Classical monocyte nTPM: 85.6
Samples: 4
Max nTPM: 111.3
Min nTPM: 64.6
RHH5313_R3680
96.0
RHH5221_R3593
111.3
RHH5250_R3622
70.5
RHH5279_R3651
64.6
Intermediate monocyte nTPM: 83.3
Samples: 4
Max nTPM: 94.0
Min nTPM: 73.5
RHH5314_R3681
85.0
RHH5222_R3594
94.0
RHH5251_R3623
80.8
RHH5280_R3652
73.5
Non-classical monocyte nTPM: 106.1
Samples: 4
Max nTPM: 130.4
Min nTPM: 79.2
RHH5315_R3682
118.7
RHH5223_R3595
130.4
RHH5252_R3624
79.2
RHH5281_R3653
96.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.5
Schmiedel sample id
TPM
Classical monocyte TPM: 36.0
Samples: 91
Max TPM: 43.0
Min TPM: 29.3
MONOCYTES_1
43.0
MONOCYTES_2
42.3
MONOCYTES_3
42.0
MONOCYTES_4
41.1
MONOCYTES_5
41.1
MONOCYTES_6
41.1
MONOCYTES_7
40.9
MONOCYTES_8
40.9
MONOCYTES_9
40.7
MONOCYTES_10
40.6
MONOCYTES_11
40.4
MONOCYTES_12
39.8
MONOCYTES_13
39.7
MONOCYTES_14
39.7
MONOCYTES_15
39.6
MONOCYTES_16
39.6
MONOCYTES_17
39.6
MONOCYTES_18
39.4
MONOCYTES_19
39.2
MONOCYTES_20
39.1
MONOCYTES_21
38.9
MONOCYTES_22
38.5
MONOCYTES_23
38.4
MONOCYTES_24
38.2
MONOCYTES_25
38.2
MONOCYTES_26
38.2
MONOCYTES_27
37.9
MONOCYTES_28
37.9
MONOCYTES_29
37.8
MONOCYTES_30
37.7
MONOCYTES_31
37.7
MONOCYTES_32
37.5
MONOCYTES_33
37.2
MONOCYTES_34
36.9
MONOCYTES_35
36.8
MONOCYTES_36
36.8
MONOCYTES_37
36.6
MONOCYTES_38
36.6
MONOCYTES_39
36.4
MONOCYTES_40
36.0
MONOCYTES_41
36.0
MONOCYTES_42
35.8
MONOCYTES_43
35.8
MONOCYTES_44
35.8
MONOCYTES_45
35.8
MONOCYTES_46
35.5
MONOCYTES_47
35.3
MONOCYTES_48
35.2
MONOCYTES_49
35.2
MONOCYTES_50
35.1
MONOCYTES_51
35.1
MONOCYTES_52
34.9
MONOCYTES_53
34.9
MONOCYTES_54
34.9
MONOCYTES_55
34.9
MONOCYTES_56
34.7
MONOCYTES_57
34.6
MONOCYTES_58
34.6
MONOCYTES_59
34.5
MONOCYTES_60
34.4
MONOCYTES_61
34.4
MONOCYTES_62
34.3
MONOCYTES_63
34.3
MONOCYTES_64
34.2
MONOCYTES_65
34.2
MONOCYTES_66
34.2
MONOCYTES_67
34.0
MONOCYTES_68
34.0
MONOCYTES_69
34.0
MONOCYTES_70
33.8
MONOCYTES_71
33.7
MONOCYTES_72
33.6
MONOCYTES_73
33.6
MONOCYTES_74
33.4
MONOCYTES_75
33.3
MONOCYTES_76
33.3
MONOCYTES_77
33.3
MONOCYTES_78
33.3
MONOCYTES_79
32.9
MONOCYTES_80
32.9
MONOCYTES_81
32.9
MONOCYTES_82
32.0
MONOCYTES_83
31.8
MONOCYTES_84
31.7
MONOCYTES_85
31.4
MONOCYTES_86
31.2
MONOCYTES_87
30.9
MONOCYTES_88
30.7
MONOCYTES_89
30.5
MONOCYTES_90
29.9
MONOCYTES_91
29.3
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Non-classical monocyte TPM: 42.5
Samples: 90
Max TPM: 53.6
Min TPM: 33.4
M2_1
53.6
M2_2
51.5
M2_3
51.5
M2_4
48.9
M2_5
47.8
M2_6
47.7
M2_7
47.6
M2_8
47.4
M2_9
46.9
M2_10
46.5
M2_11
46.2
M2_12
46.0
M2_13
46.0
M2_14
45.9
M2_15
45.8
M2_16
45.5
M2_17
45.5
M2_18
45.4
M2_19
45.2
M2_20
44.9
M2_21
44.9
M2_22
44.8
M2_23
44.5
M2_24
44.4
M2_25
44.3
M2_26
44.3
M2_27
44.2
M2_28
44.2
M2_29
44.0
M2_30
43.9
M2_31
43.6
M2_32
43.5
M2_33
43.3
M2_34
43.3
M2_35
43.3
M2_36
43.3
M2_37
43.2
M2_38
43.2
M2_39
43.1
M2_40
43.0
M2_41
42.9
M2_42
42.7
M2_43
42.6
M2_44
42.6
M2_45
42.6
M2_46
42.5
M2_47
42.2
M2_48
42.2
M2_49
42.1
M2_50
42.1
M2_51
42.0
M2_52
42.0
M2_53
42.0
M2_54
41.9
M2_55
41.8
M2_56
41.8
M2_57
41.6
M2_58
41.6
M2_59
41.4
M2_60
41.3
M2_61
41.2
M2_62
41.2
M2_63
41.1
M2_64
40.9
M2_65
40.8
M2_66
40.7
M2_67
40.5
M2_68
40.4
M2_69
40.3
M2_70
40.2
M2_71
39.9
M2_72
39.8
M2_73
39.7
M2_74
39.6
M2_75
39.6
M2_76
39.6
M2_77
39.5
M2_78
39.5
M2_79
39.3
M2_80
39.2
M2_81
39.1
M2_82
37.6
M2_83
37.3
M2_84
36.4
M2_85
36.3
M2_86
36.3
M2_87
35.9
M2_88
35.6
M2_89
33.6
M2_90
33.4
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