A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
111.1
nTPM
Monaco:
301.6
nTPM
Schmiedel:
71.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
111.1
HPA sample
nTPM
Memory B-cell nTPM: 111.1
Samples: 6
Max nTPM: 135.1
Min nTPM: 86.7
P10809_1017
92.2
P10809_1025
135.1
P10809_1044
135.1
P10809_1063
86.7
P10809_1092
115.3
P10809_1105
101.9
Naive B-cell nTPM: 104.9
Samples: 6
Max nTPM: 211.8
Min nTPM: 75.6
P10809_1011
79.1
P10809_1029
85.7
P10809_1048
211.8
P10809_1067
75.6
P10809_1091
99.4
P10809_1104
77.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
301.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 276.9
Samples: 4
Max nTPM: 306.3
Min nTPM: 247.9
RHH5310_R3677
247.9
RHH5218_R3590
306.3
RHH5247_R3619
283.9
RHH5276_R3648
269.6
Naive B-cell nTPM: 246.5
Samples: 4
Max nTPM: 286.7
Min nTPM: 212.5
RHH5308_R3675
212.5
RHH5216_R3588
286.7
RHH5245_R3617
241.3
RHH5274_R3646
245.5
Non-switched memory B-cell nTPM: 301.5
Samples: 4
Max nTPM: 323.2
Min nTPM: 264.6
RHH5309_R3676
314.0
RHH5217_R3589
264.6
RHH5246_R3618
323.2
RHH5275_R3647
304.4
Plasmablast nTPM: 111.3
Samples: 4
Max nTPM: 121.2
Min nTPM: 102.5
RHH5312_R3679
121.2
RHH5220_R3592
108.7
RHH5249_R3621
102.5
RHH5278_R3650
112.9
Switched memory B-cell nTPM: 287.4
Samples: 4
Max nTPM: 308.3
Min nTPM: 244.7
RHH5311_R3678
295.1
RHH5219_R3591
301.3
RHH5248_R3620
308.3
RHH5277_R3649
244.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.1
Schmiedel sample id
TPM
Naive B-cell TPM: 71.1
Samples: 91
Max TPM: 98.8
Min TPM: 48.1
B_CELL_NAIVE_1
98.8
B_CELL_NAIVE_2
97.8
B_CELL_NAIVE_3
95.0
B_CELL_NAIVE_4
93.5
B_CELL_NAIVE_5
91.7
B_CELL_NAIVE_6
91.4
B_CELL_NAIVE_7
90.9
B_CELL_NAIVE_8
89.6
B_CELL_NAIVE_9
89.1
B_CELL_NAIVE_10
84.1
B_CELL_NAIVE_11
83.3
B_CELL_NAIVE_12
82.8
B_CELL_NAIVE_13
82.7
B_CELL_NAIVE_14
80.7
B_CELL_NAIVE_15
80.4
B_CELL_NAIVE_16
79.6
B_CELL_NAIVE_17
76.7
B_CELL_NAIVE_18
76.7
B_CELL_NAIVE_19
76.6
B_CELL_NAIVE_20
76.4
B_CELL_NAIVE_21
76.3
B_CELL_NAIVE_22
76.2
B_CELL_NAIVE_23
76.1
B_CELL_NAIVE_24
75.7
B_CELL_NAIVE_25
75.5
B_CELL_NAIVE_26
75.5
B_CELL_NAIVE_27
75.2
B_CELL_NAIVE_28
75.1
B_CELL_NAIVE_29
74.2
B_CELL_NAIVE_30
73.7
B_CELL_NAIVE_31
73.5
B_CELL_NAIVE_32
73.4
B_CELL_NAIVE_33
72.7
B_CELL_NAIVE_34
72.3
B_CELL_NAIVE_35
71.8
B_CELL_NAIVE_36
71.4
B_CELL_NAIVE_37
71.2
B_CELL_NAIVE_38
70.6
B_CELL_NAIVE_39
70.6
B_CELL_NAIVE_40
70.4
B_CELL_NAIVE_41
70.3
B_CELL_NAIVE_42
70.3
B_CELL_NAIVE_43
70.2
B_CELL_NAIVE_44
69.9
B_CELL_NAIVE_45
69.8
B_CELL_NAIVE_46
69.6
B_CELL_NAIVE_47
69.4
B_CELL_NAIVE_48
69.3
B_CELL_NAIVE_49
68.9
B_CELL_NAIVE_50
68.4
B_CELL_NAIVE_51
68.2
B_CELL_NAIVE_52
67.9
B_CELL_NAIVE_53
67.7
B_CELL_NAIVE_54
67.6
B_CELL_NAIVE_55
67.4
B_CELL_NAIVE_56
66.7
B_CELL_NAIVE_57
66.7
B_CELL_NAIVE_58
66.3
B_CELL_NAIVE_59
66.1
B_CELL_NAIVE_60
66.0
B_CELL_NAIVE_61
66.0
B_CELL_NAIVE_62
65.7
B_CELL_NAIVE_63
65.6
B_CELL_NAIVE_64
65.6
B_CELL_NAIVE_65
65.3
B_CELL_NAIVE_66
65.0
B_CELL_NAIVE_67
64.9
B_CELL_NAIVE_68
64.5
B_CELL_NAIVE_69
64.0
B_CELL_NAIVE_70
64.0
B_CELL_NAIVE_71
63.7
B_CELL_NAIVE_72
63.7
B_CELL_NAIVE_73
63.5
B_CELL_NAIVE_74
63.4
B_CELL_NAIVE_75
63.2
B_CELL_NAIVE_76
63.1
B_CELL_NAIVE_77
62.9
B_CELL_NAIVE_78
62.2
B_CELL_NAIVE_79
62.2
B_CELL_NAIVE_80
61.9
B_CELL_NAIVE_81
61.5
B_CELL_NAIVE_82
60.9
B_CELL_NAIVE_83
60.8
B_CELL_NAIVE_84
60.3
B_CELL_NAIVE_85
59.5
B_CELL_NAIVE_86
59.1
B_CELL_NAIVE_87
58.4
B_CELL_NAIVE_88
58.0
B_CELL_NAIVE_89
56.7
B_CELL_NAIVE_90
54.9
B_CELL_NAIVE_91
48.1
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