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BETA
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  • SNAP23
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:111.1 nTPM
Monaco:301.6 nTPM
Schmiedel:71.1 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

111.1
HPA sample nTPM
Memory B-cell
nTPM: 111.1
Samples: 6

Max nTPM: 135.1
Min nTPM: 86.7
P10809_1017 92.2
P10809_1025 135.1
P10809_1044 135.1
P10809_1063 86.7
P10809_1092 115.3
P10809_1105 101.9
Naive B-cell
nTPM: 104.9
Samples: 6

Max nTPM: 211.8
Min nTPM: 75.6
P10809_1011 79.1
P10809_1029 85.7
P10809_1048 211.8
P10809_1067 75.6
P10809_1091 99.4
P10809_1104 77.6

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

301.6
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 276.9
Samples: 4

Max nTPM: 306.3
Min nTPM: 247.9
RHH5310_R3677 247.9
RHH5218_R3590 306.3
RHH5247_R3619 283.9
RHH5276_R3648 269.6
Naive B-cell
nTPM: 246.5
Samples: 4

Max nTPM: 286.7
Min nTPM: 212.5
RHH5308_R3675 212.5
RHH5216_R3588 286.7
RHH5245_R3617 241.3
RHH5274_R3646 245.5
Non-switched memory B-cell
nTPM: 301.5
Samples: 4

Max nTPM: 323.2
Min nTPM: 264.6
RHH5309_R3676 314.0
RHH5217_R3589 264.6
RHH5246_R3618 323.2
RHH5275_R3647 304.4
Plasmablast
nTPM: 111.3
Samples: 4

Max nTPM: 121.2
Min nTPM: 102.5
RHH5312_R3679 121.2
RHH5220_R3592 108.7
RHH5249_R3621 102.5
RHH5278_R3650 112.9
Switched memory B-cell
nTPM: 287.4
Samples: 4

Max nTPM: 308.3
Min nTPM: 244.7
RHH5311_R3678 295.1
RHH5219_R3591 301.3
RHH5248_R3620 308.3
RHH5277_R3649 244.7

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

71.1
Schmiedel sample id TPM
Naive B-cell
TPM: 71.1
Samples: 91

Max TPM: 98.8
Min TPM: 48.1
B_CELL_NAIVE_1 98.8
B_CELL_NAIVE_2 97.8
B_CELL_NAIVE_3 95.0
B_CELL_NAIVE_4 93.5
B_CELL_NAIVE_5 91.7
B_CELL_NAIVE_6 91.4
B_CELL_NAIVE_7 90.9
B_CELL_NAIVE_8 89.6
B_CELL_NAIVE_9 89.1
B_CELL_NAIVE_10 84.1
B_CELL_NAIVE_11 83.3
B_CELL_NAIVE_12 82.8
B_CELL_NAIVE_13 82.7
B_CELL_NAIVE_14 80.7
B_CELL_NAIVE_15 80.4
B_CELL_NAIVE_16 79.6
B_CELL_NAIVE_17 76.7
B_CELL_NAIVE_18 76.7
B_CELL_NAIVE_19 76.6
B_CELL_NAIVE_20 76.4
B_CELL_NAIVE_21 76.3
B_CELL_NAIVE_22 76.2
B_CELL_NAIVE_23 76.1
B_CELL_NAIVE_24 75.7
B_CELL_NAIVE_25 75.5
B_CELL_NAIVE_26 75.5
B_CELL_NAIVE_27 75.2
B_CELL_NAIVE_28 75.1
B_CELL_NAIVE_29 74.2
B_CELL_NAIVE_30 73.7
B_CELL_NAIVE_31 73.5
B_CELL_NAIVE_32 73.4
B_CELL_NAIVE_33 72.7
B_CELL_NAIVE_34 72.3
B_CELL_NAIVE_35 71.8
B_CELL_NAIVE_36 71.4
B_CELL_NAIVE_37 71.2
B_CELL_NAIVE_38 70.6
B_CELL_NAIVE_39 70.6
B_CELL_NAIVE_40 70.4
B_CELL_NAIVE_41 70.3
B_CELL_NAIVE_42 70.3
B_CELL_NAIVE_43 70.2
B_CELL_NAIVE_44 69.9
B_CELL_NAIVE_45 69.8
B_CELL_NAIVE_46 69.6
B_CELL_NAIVE_47 69.4
B_CELL_NAIVE_48 69.3
B_CELL_NAIVE_49 68.9
B_CELL_NAIVE_50 68.4
B_CELL_NAIVE_51 68.2
B_CELL_NAIVE_52 67.9
B_CELL_NAIVE_53 67.7
B_CELL_NAIVE_54 67.6
B_CELL_NAIVE_55 67.4
B_CELL_NAIVE_56 66.7
B_CELL_NAIVE_57 66.7
B_CELL_NAIVE_58 66.3
B_CELL_NAIVE_59 66.1
B_CELL_NAIVE_60 66.0
B_CELL_NAIVE_61 66.0
B_CELL_NAIVE_62 65.7
B_CELL_NAIVE_63 65.6
B_CELL_NAIVE_64 65.6
B_CELL_NAIVE_65 65.3
B_CELL_NAIVE_66 65.0
B_CELL_NAIVE_67 64.9
B_CELL_NAIVE_68 64.5
B_CELL_NAIVE_69 64.0
B_CELL_NAIVE_70 64.0
B_CELL_NAIVE_71 63.7
B_CELL_NAIVE_72 63.7
B_CELL_NAIVE_73 63.5
B_CELL_NAIVE_74 63.4
B_CELL_NAIVE_75 63.2
B_CELL_NAIVE_76 63.1
B_CELL_NAIVE_77 62.9
B_CELL_NAIVE_78 62.2
B_CELL_NAIVE_79 62.2
B_CELL_NAIVE_80 61.9
B_CELL_NAIVE_81 61.5
B_CELL_NAIVE_82 60.9
B_CELL_NAIVE_83 60.8
B_CELL_NAIVE_84 60.3
B_CELL_NAIVE_85 59.5
B_CELL_NAIVE_86 59.1
B_CELL_NAIVE_87 58.4
B_CELL_NAIVE_88 58.0
B_CELL_NAIVE_89 56.7
B_CELL_NAIVE_90 54.9
B_CELL_NAIVE_91 48.1
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