A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
240.2
nTPM
Monaco:
459.7
nTPM
Schmiedel:
127.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
240.2
HPA sample
nTPM
Classical monocyte nTPM: 161.7
Samples: 6
Max nTPM: 223.9
Min nTPM: 103.4
P10809_1003
170.6
P10809_1020
209.1
P10809_1039
223.9
P10809_1058
127.2
P10809_1080
136.1
P10809_1107
103.4
Intermediate monocyte nTPM: 240.2
Samples: 6
Max nTPM: 335.2
Min nTPM: 151.8
P10809_1004
209.4
P10809_1023
289.3
P10809_1042
335.2
P10809_1061
246.7
P10809_1081
208.7
P10809_1108
151.8
Non-classical monocyte nTPM: 239.0
Samples: 5
Max nTPM: 320.8
Min nTPM: 171.7
P10809_1005
219.0
P10809_1053
320.8
P10809_1072
311.0
P10809_1082
172.5
P10809_1109
171.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
459.7
Monaco sample
nTPM
Classical monocyte nTPM: 334.8
Samples: 4
Max nTPM: 383.2
Min nTPM: 315.1
RHH5313_R3680
315.1
RHH5221_R3593
383.2
RHH5250_R3622
324.8
RHH5279_R3651
315.9
Intermediate monocyte nTPM: 420.2
Samples: 4
Max nTPM: 499.5
Min nTPM: 388.4
RHH5314_R3681
392.2
RHH5222_R3594
499.5
RHH5251_R3623
388.4
RHH5280_R3652
400.6
Non-classical monocyte nTPM: 459.7
Samples: 4
Max nTPM: 559.4
Min nTPM: 418.2
RHH5315_R3682
418.2
RHH5223_R3595
559.4
RHH5252_R3624
431.0
RHH5281_R3653
430.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.9
Schmiedel sample id
TPM
Classical monocyte TPM: 61.5
Samples: 91
Max TPM: 80.6
Min TPM: 42.5
MONOCYTES_1
80.6
MONOCYTES_2
79.9
MONOCYTES_3
77.5
MONOCYTES_4
76.3
MONOCYTES_5
75.8
MONOCYTES_6
75.7
MONOCYTES_7
73.9
MONOCYTES_8
72.8
MONOCYTES_9
72.6
MONOCYTES_10
71.3
MONOCYTES_11
69.9
MONOCYTES_12
69.8
MONOCYTES_13
69.6
MONOCYTES_14
69.4
MONOCYTES_15
69.2
MONOCYTES_16
68.6
MONOCYTES_17
68.4
MONOCYTES_18
68.1
MONOCYTES_19
67.8
MONOCYTES_20
67.6
MONOCYTES_21
67.2
MONOCYTES_22
67.1
MONOCYTES_23
66.2
MONOCYTES_24
65.9
MONOCYTES_25
65.6
MONOCYTES_26
65.3
MONOCYTES_27
64.9
MONOCYTES_28
64.7
MONOCYTES_29
64.5
MONOCYTES_30
64.4
MONOCYTES_31
64.4
MONOCYTES_32
64.2
MONOCYTES_33
63.4
MONOCYTES_34
63.4
MONOCYTES_35
63.3
MONOCYTES_36
63.2
MONOCYTES_37
63.0
MONOCYTES_38
62.3
MONOCYTES_39
62.2
MONOCYTES_40
61.9
MONOCYTES_41
61.9
MONOCYTES_42
61.6
MONOCYTES_43
61.6
MONOCYTES_44
61.5
MONOCYTES_45
61.5
MONOCYTES_46
61.3
MONOCYTES_47
61.3
MONOCYTES_48
60.9
MONOCYTES_49
60.8
MONOCYTES_50
60.8
MONOCYTES_51
60.0
MONOCYTES_52
59.6
MONOCYTES_53
59.5
MONOCYTES_54
59.4
MONOCYTES_55
59.4
MONOCYTES_56
59.4
MONOCYTES_57
59.4
MONOCYTES_58
59.0
MONOCYTES_59
58.9
MONOCYTES_60
58.5
MONOCYTES_61
58.2
MONOCYTES_62
58.2
MONOCYTES_63
58.0
MONOCYTES_64
57.5
MONOCYTES_65
57.3
MONOCYTES_66
57.3
MONOCYTES_67
57.3
MONOCYTES_68
57.0
MONOCYTES_69
56.7
MONOCYTES_70
56.3
MONOCYTES_71
56.3
MONOCYTES_72
56.2
MONOCYTES_73
56.0
MONOCYTES_74
55.5
MONOCYTES_75
55.5
MONOCYTES_76
55.5
MONOCYTES_77
54.5
MONOCYTES_78
54.3
MONOCYTES_79
53.8
MONOCYTES_80
53.0
MONOCYTES_81
52.8
MONOCYTES_82
52.0
MONOCYTES_83
51.8
MONOCYTES_84
50.5
MONOCYTES_85
48.4
MONOCYTES_86
47.8
MONOCYTES_87
47.7
MONOCYTES_88
47.6
MONOCYTES_89
46.3
MONOCYTES_90
45.6
MONOCYTES_91
42.5
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Non-classical monocyte TPM: 127.9
Samples: 90
Max TPM: 197.0
Min TPM: 97.4
M2_1
197.0
M2_2
171.7
M2_3
166.7
M2_4
163.1
M2_5
157.7
M2_6
154.7
M2_7
154.4
M2_8
153.8
M2_9
150.5
M2_10
150.4
M2_11
150.0
M2_12
146.0
M2_13
143.6
M2_14
143.5
M2_15
142.7
M2_16
141.5
M2_17
141.3
M2_18
140.4
M2_19
140.3
M2_20
139.9
M2_21
139.7
M2_22
139.6
M2_23
139.1
M2_24
138.8
M2_25
138.2
M2_26
137.2
M2_27
137.0
M2_28
136.0
M2_29
135.2
M2_30
134.8
M2_31
134.2
M2_32
131.9
M2_33
131.6
M2_34
131.0
M2_35
130.6
M2_36
129.5
M2_37
128.4
M2_38
128.2
M2_39
128.1
M2_40
128.0
M2_41
128.0
M2_42
127.5
M2_43
126.8
M2_44
126.5
M2_45
126.4
M2_46
126.1
M2_47
126.1
M2_48
125.2
M2_49
124.8
M2_50
124.8
M2_51
124.0
M2_52
123.0
M2_53
122.8
M2_54
121.6
M2_55
121.0
M2_56
120.9
M2_57
120.6
M2_58
120.0
M2_59
118.8
M2_60
117.6
M2_61
117.5
M2_62
117.5
M2_63
117.3
M2_64
117.0
M2_65
116.9
M2_66
116.7
M2_67
116.7
M2_68
116.5
M2_69
115.6
M2_70
115.4
M2_71
115.3
M2_72
113.9
M2_73
113.3
M2_74
112.9
M2_75
111.8
M2_76
111.6
M2_77
111.5
M2_78
111.2
M2_79
110.4
M2_80
108.9
M2_81
105.6
M2_82
105.3
M2_83
105.3
M2_84
104.8
M2_85
104.4
M2_86
103.0
M2_87
99.7
M2_88
99.6
M2_89
98.6
M2_90
97.4
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