We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PHGDH
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • PHGDH
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:137.4 nTPM
HPA Brain:102.6 nTPM
GTEx:137.4 nTPM
FANTOM5:96.2 Scaled Tags Per Million
Pig:66.5 nTPM
Mouse:106.7 nTPM
Allen mouse:2.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.6
Sample id Sample description nTPM
Amygdala
nTPM: 102.6
1987 Female, age 91, left hemisphere 115.9
2514 Male, age 75, right hemisphere 110.3
2695 Female, age 67, right hemisphere 108.1
2814 Male, age 76, right hemisphere 92.5
2517 Female, age 94, left hemisphere 86.1
Basal amygdala
nTPM: 78.3
2609 Male, age 75, right hemisphere 115.9
1955 Male, age 76, both hemispheres 83.5
2110 Male, age 80, left hemisphere 83.2
2243 Female, age 91, right hemisphere 70.8
2685 Female, age 94, left hemisphere 67.4
2827 Female, age 67, right hemisphere 49.0
Central amygdala
nTPM: 83.5
2515 Male, age 75, right hemisphere 100.6
1905 Male, age 76, both hemispheres 87.1
2239 Male, age 80, left hemisphere 79.0
2826 Female, age 94, left hemisphere 76.0
2701 Female, age 91, right hemisphere 75.0
Corticomedial amygdala
nTPM: 77.7
2428 Male, age 75, right hemisphere 102.6
2829 Male, age 80, left hemisphere 83.8
2429 Female, age 94, left hemisphere 76.5
2242 Female, age 91, right hemisphere 73.6
2240 Male, age 76, both hemispheres 72.5
2535 Female, age 67, right hemisphere 57.2
Lateral amygdala
nTPM: 83.1
2516 Male, age 75, right hemisphere 114.1
1883 Male, age 76, both hemispheres 91.9
2256 Male, age 80, left hemisphere 88.9
2255 Female, age 91, right hemisphere 75.6
2534 Female, age 94, left hemisphere 71.3
2830 Female, age 67, right hemisphere 57.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 137.4
Samples: 181

Max nTPM: 287.6
Min nTPM: 45.0
Std nTPM: 47.9
Median nTPM: 127.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 287.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 284.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 260.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 257.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 255.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 251.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 249.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 244.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 236.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 235.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 225.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 223.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 216.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 210.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 209.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 208.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 207.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 206.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 205.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 201.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 199.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 199.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 198.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 197.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 193.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 193.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 190.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 189.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 183.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 183.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 178.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 177.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 173.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 172.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 172.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 171.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 171.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 170.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 170.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 169.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 168.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 168.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 167.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 166.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 166.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 165.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 165.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 161.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 161.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 161.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 160.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 160.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 159.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 159.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 158.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 158.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 157.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 155.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 155.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 155.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 154.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 154.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 153.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 152.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 152.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 150.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 148.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 148.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 147.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 145.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 145.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 142.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 142.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 140.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 139.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 138.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 138.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 137.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 136.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 136.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 133.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 133.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 132.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 132.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 131.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 131.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 129.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 129.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 129.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 128.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 127.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 125.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 125.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 124.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 124.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 123.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 123.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 122.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 121.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 121.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 120.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 119.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 118.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 118.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 118.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 118.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 118.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 116.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 116.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 116.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 115.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 115.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 115.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 114.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 114.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 113.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 113.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 112.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 112.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 112.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 111.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 111.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 110.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 109.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 108.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 108.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 107.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 107.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 106.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 106.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 104.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 104.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 102.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 102.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 101.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 100.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 100.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 100.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 99.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 98.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 98.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 98.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 98.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 97.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 97.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 96.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 95.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 95.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 95.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 95.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 94.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 94.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 93.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 93.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 92.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 92.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 92.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 91.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 90.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 89.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 89.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 88.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 85.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 84.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 83.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 80.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 80.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 79.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 78.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 77.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 74.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 73.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 73.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 72.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 71.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 70.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 66.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 60.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 55.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 46.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 45.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

96.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 96.2
FF:10151-102I7 76 years, female 96.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.5
Pig sample Sample description nTPM
Amygdala
nTPM: 66.5
Samples: 4

Max nTPM: 70.9
Min nTPM: 57.7
Sample A Female 68.2
Sample B Female 70.9
Sample C Male 69.2
Sample D Male 57.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 106.7
Samples: 4

Max nTPM: 117.3
Min nTPM: 96.4
Sample A Male 96.4
Sample B Male 100.5
Sample C Female 117.3
Sample D Female 112.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.9
100143511 Antisense, RP_110407_01_E08, Mouse strain C57BL/6J (56 days, male) 2.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo