MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:120.6 nTPM
HPA Brain:105.2 nTPM
GTEx:120.6 nTPM
FANTOM5:213.8 Scaled Tags Per Million
Pig:119.8 nTPM
Mouse:87.8 nTPM
Allen mouse:3.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 105.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.6
2828 Female, age 72, unknown 127.5
1870 Female, age 42, unknown 114.1
2411 Female, age 72, unknown 97.7
1833 Male, age 53, unknown 91.7
1827 Male, age 72, unknown 89.0
2586 Male, age 75, left hemisphere 82.3
1830 Male, age 51, unknown 77.8
2019 Male, age 18, unknown 75.1
2666 Male, age 74, left hemisphere 73.1
2219 Male, age 76, both hemispheres 67.7
Dorsal raphe nucleus
nTPM: 105.2
2298 Female, age 72, unknown 132.5
2016 Female, age 72, unknown 123.5
2750 Male, age 76, both hemispheres 94.9
1828 Male, age 53, unknown 92.3
2047 Male, age 72, unknown 82.8
Inferior colliculus
nTPM: 81.4
2097 Female, age 72, unknown 87.0
1848 Female, age 42, unknown 85.1
2849 Male, age 72, unknown 80.0
1890 Male, age 53, unknown 73.4
Median raphe nucleus
nTPM: 84.2
2220 Male, age 76, midline 84.2
Periaquaductal grey, anterior
nTPM: 86.4
1795 Male, age 51, unknown 93.9
2502 Female, age 75, unknown 84.2
1947 Male, age 18, unknown 81.3
Periaquaductal grey, dorsal
nTPM: 95.1
2850 Male, age 76, both hemispheres 112.7
1840 Male, age 53, unknown 91.9
2464 Female, age 72, unknown 91.9
1831 Male, age 72, unknown 83.9
Periaquaductal grey, lateral
nTPM: 103.8
2140 Male, age 76, both hemispheres 121.4
2053 Male, age 18, unknown 117.9
2272 Male, age 74, both hemispheres 71.9
Pretectal area
nTPM: 89.2
2224 Female, age 72, unknown 109.7
2273 Male, age 74, both hemispheres 107.1
2316 Male, age 76, right hemisphere 106.0
2667 Female, age 75, unknown 98.7
1815 Male, age 53, unknown 95.7
2825 Male, age 18, unknown 95.7
1944 Female, age 72, unknown 79.2
1817 Female, age 42, unknown 78.9
2407 Male, age 75, both hemispheres 74.2
2007 Male, age 72, unknown 69.9
1816 Male, age 51, unknown 66.3
Red nucleus
nTPM: 97.4
1904 Male, age 53, unknown 118.0
2503 Female, age 72, unknown 115.6
2769 Male, age 72, unknown 115.5
2227 Male, age 72, unknown 110.7
1821 Female, age 72, unknown 109.5
2725 Female, age 75, unknown 101.4
1865 Male, age 51, unknown 100.2
1954 Female, age 42, unknown 99.2
2823 Male, age 76, right hemisphere 93.1
2785 Male, age 18, unknown 83.0
2588 Male, age 74, left hemisphere 67.0
2584 Male, age 75, left hemisphere 55.4
Substantia nigra
nTPM: 81.4
2699 Male, age 18, unknown 111.2
1851 Male, age 51, unknown 95.6
2409 Female, age 72, unknown 88.7
1916 Female, age 42, unknown 84.4
1889 Female, age 72, unknown 83.5
2583 Male, age 75, right hemisphere 75.1
2590 Female, age 75, unknown 73.6
2241 Male, age 72, unknown 72.3
1941 Male, age 53, unknown 66.9
2665 Male, age 74, both hemispheres 62.7
Superior colliculus
nTPM: 93.5
1995 Male, age 72, unknown 128.2
1913 Female, age 42, unknown 127.3
1796 Male, age 53, unknown 103.6
1839 Male, age 51, unknown 89.3
2587 Male, age 74, left hemisphere 88.5
2668 Female, age 75, unknown 85.9
1895 Male, age 76, right hemisphere 81.8
2087 Female, age 72, unknown 80.0
2664 Male, age 75, both hemispheres 76.4
2261 Male, age 18, unknown 74.4
Ventral tegmental area
nTPM: 89.0
1942 Male, age 51, unknown 100.0
2410 Female, age 72, unknown 99.6
1915 Female, age 42, unknown 92.2
2021 Male, age 53, unknown 85.4
2223 Female, age 72, unknown 78.5
2218 Male, age 76, both hemispheres 78.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 120.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 120.6
Samples: 183

Max nTPM: 276.3
Min nTPM: 29.9
Std nTPM: 40.4
Median nTPM: 114.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 276.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 246.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 228.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 210.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 201.6
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 196.5
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 195.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 194.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 194.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 194.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 190.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 213.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 213.8
FF:10158-103A5 76 years, female 213.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 119.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 106.2
Samples: 4

Max nTPM: 137.2
Min nTPM: 76.2
Sample A Female 116.3
Sample B Female 76.2
Sample C Male 95.2
Sample D Male 137.2
Midbrain
nTPM: 119.8
Samples: 4

Max nTPM: 234.6
Min nTPM: 56.0
Sample A Female 234.6
Sample B Female 90.0
Sample C Male 98.6
Sample D Male 56.0
Periaqueductal gray
nTPM: 77.8
Samples: 3

Max nTPM: 83.5
Min nTPM: 69.5
Sample B Female 83.5
Sample C Male 80.3
Sample D Male 69.5
Superior colliculi
nTPM: 96.5
Samples: 4

Max nTPM: 112.8
Min nTPM: 58.5
Sample A Female 110.4
Sample B Female 58.5
Sample C Male 112.8
Sample D Male 104.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 87.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.8
Samples: 4

Max nTPM: 98.0
Min nTPM: 79.3
Sample A Male 98.0
Sample B Male 79.3
Sample C Female 84.6
Sample D Female 89.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
100143511 Antisense, RP_110407_01_E08, Mouse strain C57BL/6J (56 days, male) 3.1

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