HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni
Consensus:104.9 nTPM
HPA Brain:91.3 nTPM
GTEx:104.9 nTPM
FANTOM5:103.2 Scaled Tags Per Million
Pig:80.5 nTPM
Mouse:107.8 nTPM
Allen mouse:3.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021241Antibody HPA024031Antibody CAB003681Antibody CAB068216
Glial cells HighHighHighHigh
Neuronal cells LowNot detectedNot detectedLow









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 91.3
Sample id Sample description nTPM
Hippocampus
nTPM: 91.3
1911 Female, age 85, right hemisphere 98.0
2529 Female, age 94, left hemisphere 95.9
2148 Female, age 91, left hemisphere 92.3
1855 Male, age 76, left hemisphere 91.3
1898 Male, age 80, left hemisphere 90.4
2621 Female, age 67, right hemisphere 79.8
Dentate gyrus
nTPM: 79.4
2528 Male, age 74, both hemispheres 105.5
2010 Male, age 76, both hemispheres 98.6
2530 Female, age 94, left hemisphere 77.6
2246 Female, age 85, both hemispheres 73.4
1927 Female, age 91, both hemispheres 62.6
2531 Female, age 67, both hemispheres 58.8
Entorhinal gyrus
nTPM: 77.1
2117 Female, age 91, right hemisphere 133.5
1787 Male, age 76, left hemisphere 79.6
1938 Female, age 85, left hemisphere 76.7
2764 Male, age 80, right hemisphere 71.0
2686 Male, age 75, right hemisphere 55.1
2613 Female, age 94, left hemisphere 46.4
Hippocampus, CA1
nTPM: 78.1
2527 Male, age 74, both hemispheres 99.0
1873 Female, age 85, both hemispheres 94.5
2082 Female, age 91, right hemisphere 78.0
2045 Male, age 76, both hemispheres 74.1
2749 Male, age 80, left hemisphere 45.0
Hippocampus, CA2
nTPM: 79.0
2249 Male, age 74, both hemispheres 113.0
1940 Female, age 85, left hemisphere 89.3
2113 Female, age 91, right hemisphere 81.7
1963 Male, age 80, left hemisphere 77.1
2437 Female, age 94, left hemisphere 58.1
1892 Male, age 76, both hemispheres 54.8
Hippocampus, CA3
nTPM: 68.2
1891 Female, age 85, both hemispheres 100.9
2436 Male, age 74, both hemispheres 77.1
2861 Female, age 67, both hemispheres 65.0
1867 Male, age 76, both hemispheres 63.8
2620 Female, age 94, left hemisphere 63.1
2137 Male, age 80, left hemisphere 39.1
Parahippocampal cortex
nTPM: 69.3
2018 Male, age 76, both hemispheres 91.3
2692 Male, age 74, both hemispheres 86.7
2250 Female, age 67, right hemisphere 80.9
1990 Female, age 91, right hemisphere 74.8
2622 Female, age 67, right hemisphere 70.1
2245 Female, age 91, both hemispheres 68.6
1933 Female, age 85, both hemispheres 61.9
1850 Male, age 80, both hemispheres 60.9
2532 Female, age 72, left hemisphere 53.8
2693 Female, age 94, both hemispheres 44.2
Perirhinal gyrus
nTPM: 56.6
1847 Female, age 91, left hemisphere 62.8
2521 Female, age 94, right hemisphere 62.6
1794 Male, age 80, right hemisphere 54.6
2848 Male, age 76, right hemisphere 53.8
1841 Female, age 85, right hemisphere 49.3
Subiculum
nTPM: 89.1
2042 Male, age 76, both hemispheres 102.1
2619 Male, age 74, both hemispheres 102.0
2729 Female, age 91, right hemisphere 100.1
1901 Male, age 80, both hemispheres 84.3
1977 Female, age 85, both hemispheres 79.4
2438 Female, age 94, left hemisphere 66.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 104.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 104.9
Samples: 255

Max nTPM: 226.8
Min nTPM: 30.4
Std nTPM: 34.0
Median nTPM: 106.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 226.8
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 199.4
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 192.9
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 182.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 180.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 179.8
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 179.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 178.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 178.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 176.1
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 169.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 103.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 103.2
FF:10153-102I9 76 years, female 128.6
FF:10169-103B7 60 years, female 77.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 80.5
Pig sample Sample description nTPM
Subiculum
nTPM: 64.7
Samples: 4

Max nTPM: 79.9
Min nTPM: 52.4
Sample A Female 79.9
Sample B Female 60.8
Sample C Male 65.8
Sample D Male 52.4
Dorsal hippocampus
nTPM: 80.5
Samples: 4

Max nTPM: 104.0
Min nTPM: 53.3
Sample A Female 104.0
Sample B Female 64.4
Sample C Male 100.2
Sample D Male 53.3
Entorhinal cortex
nTPM: 63.3
Samples: 4

Max nTPM: 74.9
Min nTPM: 45.8
Sample A Female 60.6
Sample B Female 74.9
Sample C Male 71.7
Sample D Male 45.8
Ventral hippocampus
nTPM: 76.7
Samples: 4

Max nTPM: 102.8
Min nTPM: 53.5
Sample A Female 74.5
Sample B Female 53.5
Sample C Male 102.8
Sample D Male 75.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 107.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 104.6
Samples: 4

Max nTPM: 118.3
Min nTPM: 96.0
Sample A Male 118.3
Sample B Male 96.0
Sample C Female 107.3
Sample D Female 96.9
Hippocampal formation
nTPM: 107.8
Samples: 4

Max nTPM: 113.6
Min nTPM: 95.1
Sample A Male 111.7
Sample B Male 95.1
Sample C Female 110.8
Sample D Female 113.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.5
100143511 Antisense, RP_110407_01_E08, Mouse strain C57BL/6J (56 days, male) 3.5

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