MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.3 nTPM
HPA Brain:63.4 nTPM
GTEx:53.3 nTPM
FANTOM5:41.2 Scaled Tags Per Million
Pig:5.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.9
2586 Male, age 75, left hemisphere 70.3
1830 Male, age 51, unknown 51.9
1833 Male, age 53, unknown 50.9
2411 Female, age 72, unknown 47.3
1870 Female, age 42, unknown 45.7
2666 Male, age 74, left hemisphere 45.4
2019 Male, age 18, unknown 42.4
2219 Male, age 76, both hemispheres 41.5
2828 Female, age 72, unknown 40.7
1827 Male, age 72, unknown 33.2
Dorsal raphe nucleus
nTPM: 29.7
2750 Male, age 76, both hemispheres 51.1
1828 Male, age 53, unknown 30.7
2016 Female, age 72, unknown 29.1
2047 Male, age 72, unknown 20.2
2298 Female, age 72, unknown 17.5
Inferior colliculus
nTPM: 30.5
1890 Male, age 53, unknown 36.5
2849 Male, age 72, unknown 34.2
1848 Female, age 42, unknown 29.0
2097 Female, age 72, unknown 22.4
Median raphe nucleus
nTPM: 22.9
2220 Male, age 76, midline 22.9
Periaquaductal grey, anterior
nTPM: 34.5
1947 Male, age 18, unknown 38.3
2502 Female, age 75, unknown 36.7
1795 Male, age 51, unknown 28.6
Periaquaductal grey, dorsal
nTPM: 22.9
2464 Female, age 72, unknown 34.7
1831 Male, age 72, unknown 22.5
2850 Male, age 76, both hemispheres 18.6
1840 Male, age 53, unknown 15.9
Periaquaductal grey, lateral
nTPM: 23.8
2272 Male, age 74, both hemispheres 24.8
2140 Male, age 76, both hemispheres 24.3
2053 Male, age 18, unknown 22.3
Pretectal area
nTPM: 25.6
2407 Male, age 75, both hemispheres 36.7
1815 Male, age 53, unknown 35.7
2316 Male, age 76, right hemisphere 32.7
2825 Male, age 18, unknown 29.8
2007 Male, age 72, unknown 29.2
1817 Female, age 42, unknown 25.0
2667 Female, age 75, unknown 20.7
1816 Male, age 51, unknown 20.0
2224 Female, age 72, unknown 19.1
2273 Male, age 74, both hemispheres 17.7
1944 Female, age 72, unknown 14.5
Red nucleus
nTPM: 63.4
2227 Male, age 72, unknown 76.7
2769 Male, age 72, unknown 76.5
2503 Female, age 72, unknown 72.3
1865 Male, age 51, unknown 71.3
1904 Male, age 53, unknown 69.8
2823 Male, age 76, right hemisphere 69.0
2588 Male, age 74, left hemisphere 68.3
2785 Male, age 18, unknown 57.7
1821 Female, age 72, unknown 55.8
2584 Male, age 75, left hemisphere 52.0
1954 Female, age 42, unknown 49.7
2725 Female, age 75, unknown 42.4
Substantia nigra
nTPM: 30.9
2583 Male, age 75, right hemisphere 41.7
2699 Male, age 18, unknown 41.0
2590 Female, age 75, unknown 36.6
1851 Male, age 51, unknown 33.3
2665 Male, age 74, both hemispheres 32.6
2409 Female, age 72, unknown 32.4
1889 Female, age 72, unknown 28.2
1941 Male, age 53, unknown 23.5
1916 Female, age 42, unknown 20.3
2241 Male, age 72, unknown 20.0
Superior colliculus
nTPM: 37.8
1995 Male, age 72, unknown 49.4
2668 Female, age 75, unknown 49.0
1913 Female, age 42, unknown 47.0
2664 Male, age 75, both hemispheres 41.5
1895 Male, age 76, right hemisphere 38.8
1839 Male, age 51, unknown 37.2
2587 Male, age 74, left hemisphere 37.2
1796 Male, age 53, unknown 29.9
2261 Male, age 18, unknown 24.8
2087 Female, age 72, unknown 22.7
Ventral tegmental area
nTPM: 30.6
2223 Female, age 72, unknown 46.8
1942 Male, age 51, unknown 30.1
2410 Female, age 72, unknown 28.3
2021 Male, age 53, unknown 26.4
2218 Male, age 76, both hemispheres 26.2
1915 Female, age 42, unknown 26.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 53.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.3
Samples: 183

Max nTPM: 247.6
Min nTPM: 3.8
Std nTPM: 30.8
Median nTPM: 46.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 247.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 127.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 126.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 126.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 126.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 117.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 116.9
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 116.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 115.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 115.7
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 114.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.2
FF:10158-103A5 76 years, female 41.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 5.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.9
Samples: 4

Max nTPM: 11.8
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 4.6
Sample C Male 3.7
Sample D Male 11.8
Midbrain
nTPM: 5.1
Samples: 4

Max nTPM: 9.2
Min nTPM: 3.0
Sample A Female 9.2
Sample B Female 3.0
Sample C Male 3.5
Sample D Male 4.7
Periaqueductal gray
nTPM: 4.0
Samples: 3

Max nTPM: 4.8
Min nTPM: 3.5
Sample B Female 3.5
Sample C Male 3.8
Sample D Male 4.8
Superior colliculi
nTPM: 3.9
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 3.2
Sample C Male 3.7
Sample D Male 5.6

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