On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
27.8
nTPM
HPA Brain:
126.2
nTPM
GTEx:
27.8
nTPM
FANTOM5:
90.7
Scaled Tags Per Million
Macaque:
31.3
nTPM
Mouse:
14.9
nTPM
Rat:
41.3
nTPM
Pig:
33.3
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
126.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 104.0
1830
Male, age 51, unknown
136.6
1870
Female, age 42, unknown
121.5
2411
Female, age 72, unknown
121.4
1833
Male, age 53, unknown
120.2
2019
Male, age 18, unknown
115.9
2586
Male, age 75, left hemisphere
99.4
2828
Female, age 72, unknown
86.4
2666
Male, age 74, left hemisphere
83.0
1827
Male, age 72, unknown
80.9
2219
Male, age 76, both hemispheres
74.3
Dorsal raphe nucleus nTPM: 80.9
2750
Male, age 76, both hemispheres
129.0
1828
Male, age 53, unknown
83.2
2016
Female, age 72, unknown
78.4
2047
Male, age 72, unknown
63.1
2298
Female, age 72, unknown
50.6
Inferior colliculus nTPM: 70.5
1890
Male, age 53, unknown
79.7
2849
Male, age 72, unknown
73.3
1848
Female, age 42, unknown
73.2
2097
Female, age 72, unknown
55.8
Median raphe nucleus nTPM: 91.4
2220
Male, age 76, midline
91.4
Periaquaductal grey, anterior nTPM: 68.9
2502
Female, age 75, unknown
81.7
1947
Male, age 18, unknown
70.9
1795
Male, age 51, unknown
54.2
Periaquaductal grey, dorsal nTPM: 61.9
2464
Female, age 72, unknown
79.4
2850
Male, age 76, both hemispheres
64.9
1831
Male, age 72, unknown
58.2
1840
Male, age 53, unknown
45.0
Periaquaductal grey, lateral nTPM: 70.5
2140
Male, age 76, both hemispheres
73.4
2053
Male, age 18, unknown
71.7
2272
Male, age 74, both hemispheres
66.5
Pretectal area nTPM: 68.5
2407
Male, age 75, both hemispheres
97.9
2316
Male, age 76, right hemisphere
85.6
1815
Male, age 53, unknown
80.9
2825
Male, age 18, unknown
78.5
2667
Female, age 75, unknown
68.7
2224
Female, age 72, unknown
64.3
2273
Male, age 74, both hemispheres
64.3
1817
Female, age 42, unknown
63.3
2007
Male, age 72, unknown
62.9
1944
Female, age 72, unknown
45.8
1816
Male, age 51, unknown
41.3
Red nucleus nTPM: 126.2
1865
Male, age 51, unknown
164.0
1904
Male, age 53, unknown
145.2
2823
Male, age 76, right hemisphere
140.2
2769
Male, age 72, unknown
139.1
1821
Female, age 72, unknown
132.0
2227
Male, age 72, unknown
131.8
2785
Male, age 18, unknown
131.3
1954
Female, age 42, unknown
118.1
2503
Female, age 72, unknown
114.9
2588
Male, age 74, left hemisphere
111.7
2584
Male, age 75, left hemisphere
104.9
2725
Female, age 75, unknown
81.4
Substantia nigra nTPM: 84.9
2583
Male, age 75, right hemisphere
114.7
1851
Male, age 51, unknown
96.4
2590
Female, age 75, unknown
95.9
2699
Male, age 18, unknown
89.8
2409
Female, age 72, unknown
87.5
2241
Male, age 72, unknown
80.1
1889
Female, age 72, unknown
75.2
1916
Female, age 42, unknown
73.1
1941
Male, age 53, unknown
70.3
2665
Male, age 74, both hemispheres
66.3
Superior colliculus nTPM: 82.0
1913
Female, age 42, unknown
119.0
1995
Male, age 72, unknown
112.8
1895
Male, age 76, right hemisphere
90.0
2587
Male, age 74, left hemisphere
86.1
2668
Female, age 75, unknown
85.6
1839
Male, age 51, unknown
82.7
2664
Male, age 75, both hemispheres
73.4
1796
Male, age 53, unknown
65.1
2087
Female, age 72, unknown
56.3
2261
Male, age 18, unknown
49.1
Ventral tegmental area nTPM: 94.2
2223
Female, age 72, unknown
119.3
2410
Female, age 72, unknown
111.6
1942
Male, age 51, unknown
88.0
2021
Male, age 53, unknown
87.9
2218
Male, age 76, both hemispheres
81.0
1915
Female, age 42, unknown
77.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 27.8
Samples: 183
Max nTPM: 65.5
Min nTPM: 6.8
Std nTPM: 11.6
Median nTPM: 24.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
65.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
65.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
65.0
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
62.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
62.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
60.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
60.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
53.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
52.0
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
51.8
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
51.0
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
48.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
46.5
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
46.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
45.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
44.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
44.0
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
43.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
43.5
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
41.9
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
41.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
41.3
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
41.3
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
41.2
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
40.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
40.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
39.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
39.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
39.5
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
39.4
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
39.3
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
38.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
38.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
36.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
36.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
36.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
36.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
35.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
35.4
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
35.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
35.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
35.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
35.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
34.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
34.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
34.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
34.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
33.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
32.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
32.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
32.3
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
32.1
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
32.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
31.9
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
31.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
31.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
31.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
30.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
30.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
30.4
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
30.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
30.0
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
29.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
29.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
29.0
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
29.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
28.9
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
28.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
28.4
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
28.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
27.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
27.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
27.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
27.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
27.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
27.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
27.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
27.2
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
27.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
26.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
26.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
26.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
26.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
25.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
25.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
25.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
25.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
25.0
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
24.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
24.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
24.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
24.5
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
24.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
24.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
24.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
24.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
24.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
23.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
23.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
23.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
23.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
23.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
23.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
23.4
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
23.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
23.1
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
22.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
22.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
22.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
22.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
22.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
22.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
22.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
22.2
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
21.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
21.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
21.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
21.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
21.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
21.3
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
21.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
21.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
21.0
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
20.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
20.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
20.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
20.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
20.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
20.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
20.0
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
19.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
19.8
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
19.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
19.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
19.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
19.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
19.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
19.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
19.1
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
19.1
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
19.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
18.9
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
18.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
18.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
18.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
18.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
18.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
17.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
17.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
17.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
17.7
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
17.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
17.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
17.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
17.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
17.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
17.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
17.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
17.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
17.2
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
17.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
16.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
16.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
16.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
16.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
16.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
16.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
15.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
14.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
14.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
14.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
14.5
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
14.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
14.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
14.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
13.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
13.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
13.6
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
13.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
12.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
12.3
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
8.9
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
6.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.3
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 31.3
Samples: 1
Max nTPM: 31.3
Min nTPM: 31.3
Sample A
31.3
Midbrain nTPM: 18.8
Samples: 1
Max nTPM: 18.8
Min nTPM: 18.8
Sample A
18.8
Superior colliculi nTPM: 26.2
Samples: 1
Max nTPM: 26.2
Min nTPM: 26.2
Sample A
26.2
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
33.3
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 33.3
Samples: 3
Max nTPM: 37.0
Min nTPM: 28.0
Sample A
Female
37.0
Sample B
Female
28.0
Sample C
Male
34.9
Midbrain nTPM: 28.6
Samples: 3
Max nTPM: 38.9
Min nTPM: 22.6
Sample B
Female
38.9
Sample C
Male
22.6
Sample D
Male
24.2
Periaqueductal gray nTPM: 31.0
Samples: 3
Max nTPM: 35.8
Min nTPM: 28.1
Sample B
Female
35.8
Sample C
Male
28.1
Sample D
Male
29.1
Superior colliculi nTPM: 27.5
Samples: 4
Max nTPM: 34.6
Min nTPM: 15.4
Sample A
Female
31.3
Sample B
Female
15.4
Sample C
Male
28.8
Sample D
Male
34.6
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 14.9
Samples: 4
Max nTPM: 15.6
Min nTPM: 14.5
Sample A
14.9
Sample B
15.6
Sample C
14.6
Sample D
14.5
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.3
Rat sample
Sample description
nTPM
Midbrain nTPM: 41.3
Samples: 4
Max nTPM: 43.6
Min nTPM: 39.9
Sample A
39.9
Sample A
43.6
Sample A
39.9
Sample A
41.7
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The Human Protein Atlas project is funded
