A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
312.6
nTPM
Monaco:
407.5
nTPM
Schmiedel:
36.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
312.6
HPA sample
nTPM
Classical monocyte nTPM: 312.6
Samples: 6
Max nTPM: 377.2
Min nTPM: 250.0
P10809_1003
323.2
P10809_1020
352.5
P10809_1039
283.7
P10809_1058
250.0
P10809_1080
288.9
P10809_1107
377.2
Intermediate monocyte nTPM: 218.0
Samples: 6
Max nTPM: 279.7
Min nTPM: 172.0
P10809_1004
178.4
P10809_1023
249.8
P10809_1042
249.8
P10809_1061
172.0
P10809_1081
178.6
P10809_1108
279.7
Non-classical monocyte nTPM: 152.2
Samples: 5
Max nTPM: 189.7
Min nTPM: 113.6
P10809_1005
130.6
P10809_1053
149.4
P10809_1072
189.7
P10809_1082
113.6
P10809_1109
177.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
407.5
Monaco sample
nTPM
Classical monocyte nTPM: 407.5
Samples: 4
Max nTPM: 493.9
Min nTPM: 259.2
RHH5313_R3680
423.4
RHH5221_R3593
259.2
RHH5250_R3622
453.5
RHH5279_R3651
493.9
Intermediate monocyte nTPM: 229.7
Samples: 4
Max nTPM: 317.6
Min nTPM: 136.9
RHH5314_R3681
311.9
RHH5222_R3594
136.9
RHH5251_R3623
152.2
RHH5280_R3652
317.6
Non-classical monocyte nTPM: 132.3
Samples: 4
Max nTPM: 206.7
Min nTPM: 69.9
RHH5315_R3682
139.9
RHH5223_R3595
69.9
RHH5252_R3624
112.5
RHH5281_R3653
206.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.8
Schmiedel sample id
TPM
Classical monocyte TPM: 36.8
Samples: 91
Max TPM: 60.7
Min TPM: 13.7
MONOCYTES_1
60.7
MONOCYTES_2
60.1
MONOCYTES_3
56.8
MONOCYTES_4
56.5
MONOCYTES_5
56.5
MONOCYTES_6
56.3
MONOCYTES_7
56.0
MONOCYTES_8
55.0
MONOCYTES_9
54.9
MONOCYTES_10
54.7
MONOCYTES_11
54.2
MONOCYTES_12
54.1
MONOCYTES_13
53.8
MONOCYTES_14
52.4
MONOCYTES_15
51.4
MONOCYTES_16
51.0
MONOCYTES_17
50.4
MONOCYTES_18
50.2
MONOCYTES_19
49.2
MONOCYTES_20
48.9
MONOCYTES_21
48.4
MONOCYTES_22
47.4
MONOCYTES_23
46.0
MONOCYTES_24
45.7
MONOCYTES_25
44.9
MONOCYTES_26
43.4
MONOCYTES_27
43.3
MONOCYTES_28
42.1
MONOCYTES_29
41.9
MONOCYTES_30
41.9
MONOCYTES_31
41.4
MONOCYTES_32
41.2
MONOCYTES_33
41.1
MONOCYTES_34
41.0
MONOCYTES_35
40.5
MONOCYTES_36
40.5
MONOCYTES_37
40.3
MONOCYTES_38
40.0
MONOCYTES_39
39.2
MONOCYTES_40
38.9
MONOCYTES_41
38.5
MONOCYTES_42
36.7
MONOCYTES_43
36.6
MONOCYTES_44
35.4
MONOCYTES_45
35.0
MONOCYTES_46
34.7
MONOCYTES_47
34.5
MONOCYTES_48
34.4
MONOCYTES_49
34.2
MONOCYTES_50
33.8
MONOCYTES_51
33.7
MONOCYTES_52
33.5
MONOCYTES_53
33.2
MONOCYTES_54
32.0
MONOCYTES_55
31.8
MONOCYTES_56
31.8
MONOCYTES_57
31.7
MONOCYTES_58
31.6
MONOCYTES_59
31.3
MONOCYTES_60
31.0
MONOCYTES_61
31.0
MONOCYTES_62
30.8
MONOCYTES_63
30.7
MONOCYTES_64
30.2
MONOCYTES_65
29.7
MONOCYTES_66
29.3
MONOCYTES_67
29.2
MONOCYTES_68
29.0
MONOCYTES_69
28.6
MONOCYTES_70
27.9
MONOCYTES_71
27.9
MONOCYTES_72
26.3
MONOCYTES_73
26.3
MONOCYTES_74
25.9
MONOCYTES_75
25.1
MONOCYTES_76
24.5
MONOCYTES_77
23.7
MONOCYTES_78
23.2
MONOCYTES_79
21.8
MONOCYTES_80
21.1
MONOCYTES_81
20.9
MONOCYTES_82
20.6
MONOCYTES_83
20.3
MONOCYTES_84
19.9
MONOCYTES_85
19.3
MONOCYTES_86
18.8
MONOCYTES_87
18.7
MONOCYTES_88
17.5
MONOCYTES_89
16.6
MONOCYTES_90
14.2
MONOCYTES_91
13.7
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Non-classical monocyte TPM: 11.1
Samples: 90
Max TPM: 23.3
Min TPM: 2.2
M2_1
23.3
M2_2
21.3
M2_3
20.4
M2_4
20.4
M2_5
19.6
M2_6
19.1
M2_7
18.8
M2_8
18.6
M2_9
18.2
M2_10
17.3
M2_11
17.2
M2_12
16.8
M2_13
16.6
M2_14
16.6
M2_15
16.5
M2_16
15.8
M2_17
15.7
M2_18
15.6
M2_19
15.6
M2_20
15.4
M2_21
15.2
M2_22
15.2
M2_23
14.3
M2_24
14.0
M2_25
13.6
M2_26
13.6
M2_27
13.5
M2_28
13.4
M2_29
13.3
M2_30
13.2
M2_31
13.2
M2_32
13.1
M2_33
12.9
M2_34
12.8
M2_35
12.7
M2_36
12.4
M2_37
12.2
M2_38
12.2
M2_39
12.0
M2_40
11.3
M2_41
11.2
M2_42
11.1
M2_43
11.0
M2_44
10.9
M2_45
10.9
M2_46
10.9
M2_47
10.7
M2_48
10.6
M2_49
10.6
M2_50
10.6
M2_51
10.4
M2_52
10.4
M2_53
10.0
M2_54
9.9
M2_55
9.8
M2_56
9.5
M2_57
9.3
M2_58
9.2
M2_59
8.9
M2_60
8.9
M2_61
8.7
M2_62
8.6
M2_63
8.6
M2_64
8.3
M2_65
7.7
M2_66
7.6
M2_67
7.0
M2_68
7.0
M2_69
7.0
M2_70
6.9
M2_71
6.5
M2_72
6.4
M2_73
6.2
M2_74
6.2
M2_75
5.6
M2_76
5.6
M2_77
5.0
M2_78
5.0
M2_79
4.8
M2_80
4.8
M2_81
4.5
M2_82
4.2
M2_83
4.2
M2_84
3.7
M2_85
3.7
M2_86
3.6
M2_87
3.4
M2_88
3.1
M2_89
2.7
M2_90
2.2
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