A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.3
nTPM
Monaco:
123.7
nTPM
Schmiedel:
38.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.3
HPA sample
nTPM
Memory B-cell nTPM: 28.8
Samples: 6
Max nTPM: 40.4
Min nTPM: 18.9
P10809_1017
40.4
P10809_1025
25.1
P10809_1044
38.8
P10809_1063
18.9
P10809_1092
27.4
P10809_1105
22.0
Naive B-cell nTPM: 29.3
Samples: 6
Max nTPM: 43.8
Min nTPM: 21.6
P10809_1011
28.3
P10809_1029
26.2
P10809_1048
43.8
P10809_1067
21.6
P10809_1091
29.3
P10809_1104
26.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
123.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 110.1
Samples: 4
Max nTPM: 133.4
Min nTPM: 94.5
RHH5310_R3677
100.0
RHH5218_R3590
133.4
RHH5247_R3619
112.3
RHH5276_R3648
94.5
Naive B-cell nTPM: 123.7
Samples: 4
Max nTPM: 164.4
Min nTPM: 93.6
RHH5308_R3675
137.6
RHH5216_R3588
164.4
RHH5245_R3617
93.6
RHH5274_R3646
99.1
Non-switched memory B-cell nTPM: 97.6
Samples: 4
Max nTPM: 105.5
Min nTPM: 89.0
RHH5309_R3676
89.0
RHH5217_R3589
92.1
RHH5246_R3618
103.7
RHH5275_R3647
105.5
Plasmablast nTPM: 120.4
Samples: 4
Max nTPM: 132.5
Min nTPM: 108.7
RHH5312_R3679
128.0
RHH5220_R3592
132.5
RHH5249_R3621
108.7
RHH5278_R3650
112.3
Switched memory B-cell nTPM: 110.2
Samples: 4
Max nTPM: 136.0
Min nTPM: 87.4
RHH5311_R3678
87.4
RHH5219_R3591
136.0
RHH5248_R3620
116.1
RHH5277_R3649
101.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.4
Schmiedel sample id
TPM
Naive B-cell TPM: 38.4
Samples: 91
Max TPM: 66.8
Min TPM: 16.5
B_CELL_NAIVE_1
66.8
B_CELL_NAIVE_2
66.3
B_CELL_NAIVE_3
63.5
B_CELL_NAIVE_4
57.9
B_CELL_NAIVE_5
55.4
B_CELL_NAIVE_6
55.3
B_CELL_NAIVE_7
54.2
B_CELL_NAIVE_8
52.8
B_CELL_NAIVE_9
52.8
B_CELL_NAIVE_10
52.5
B_CELL_NAIVE_11
52.1
B_CELL_NAIVE_12
50.5
B_CELL_NAIVE_13
50.2
B_CELL_NAIVE_14
49.5
B_CELL_NAIVE_15
48.6
B_CELL_NAIVE_16
48.4
B_CELL_NAIVE_17
47.2
B_CELL_NAIVE_18
46.0
B_CELL_NAIVE_19
45.8
B_CELL_NAIVE_20
44.1
B_CELL_NAIVE_21
44.0
B_CELL_NAIVE_22
43.8
B_CELL_NAIVE_23
43.5
B_CELL_NAIVE_24
43.0
B_CELL_NAIVE_25
42.9
B_CELL_NAIVE_26
42.2
B_CELL_NAIVE_27
42.0
B_CELL_NAIVE_28
42.0
B_CELL_NAIVE_29
41.8
B_CELL_NAIVE_30
41.7
B_CELL_NAIVE_31
41.4
B_CELL_NAIVE_32
41.2
B_CELL_NAIVE_33
40.9
B_CELL_NAIVE_34
40.1
B_CELL_NAIVE_35
38.8
B_CELL_NAIVE_36
38.7
B_CELL_NAIVE_37
38.5
B_CELL_NAIVE_38
38.5
B_CELL_NAIVE_39
38.4
B_CELL_NAIVE_40
38.2
B_CELL_NAIVE_41
38.1
B_CELL_NAIVE_42
37.8
B_CELL_NAIVE_43
37.8
B_CELL_NAIVE_44
37.7
B_CELL_NAIVE_45
37.3
B_CELL_NAIVE_46
37.2
B_CELL_NAIVE_47
37.1
B_CELL_NAIVE_48
37.0
B_CELL_NAIVE_49
36.9
B_CELL_NAIVE_50
36.7
B_CELL_NAIVE_51
36.5
B_CELL_NAIVE_52
35.9
B_CELL_NAIVE_53
34.7
B_CELL_NAIVE_54
34.5
B_CELL_NAIVE_55
34.4
B_CELL_NAIVE_56
34.4
B_CELL_NAIVE_57
34.3
B_CELL_NAIVE_58
34.3
B_CELL_NAIVE_59
34.1
B_CELL_NAIVE_60
33.9
B_CELL_NAIVE_61
33.8
B_CELL_NAIVE_62
33.6
B_CELL_NAIVE_63
33.0
B_CELL_NAIVE_64
33.0
B_CELL_NAIVE_65
32.9
B_CELL_NAIVE_66
32.8
B_CELL_NAIVE_67
32.8
B_CELL_NAIVE_68
32.4
B_CELL_NAIVE_69
31.2
B_CELL_NAIVE_70
31.2
B_CELL_NAIVE_71
31.1
B_CELL_NAIVE_72
31.0
B_CELL_NAIVE_73
30.7
B_CELL_NAIVE_74
30.0
B_CELL_NAIVE_75
29.9
B_CELL_NAIVE_76
29.2
B_CELL_NAIVE_77
28.6
B_CELL_NAIVE_78
28.2
B_CELL_NAIVE_79
28.0
B_CELL_NAIVE_80
27.8
B_CELL_NAIVE_81
27.0
B_CELL_NAIVE_82
26.8
B_CELL_NAIVE_83
26.5
B_CELL_NAIVE_84
26.0
B_CELL_NAIVE_85
25.9
B_CELL_NAIVE_86
25.9
B_CELL_NAIVE_87
25.6
B_CELL_NAIVE_88
25.4
B_CELL_NAIVE_89
23.3
B_CELL_NAIVE_90
20.4
B_CELL_NAIVE_91
16.5
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The Human Protein Atlas project is funded
