On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
47.3
nTPM
HPA Brain:
62.6
nTPM
GTEx:
47.3
nTPM
FANTOM5:
118.7
Scaled Tags Per Million
Macaque:
25.6
nTPM
Mouse:
24.7
nTPM
Rat:
18.1
nTPM
Pig:
27.7
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
2942
Sample
Intensity
Spinal cord_01
ND
Spinal cord_02
ND
Spinal cord_03
4580
Spinal cord_04
3601
Spinal cord_05
2942
Spinal cord_06
1575
Spinal cord_07
2469
Spinal cord_08
ND
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
62.6
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 60.3
2193
Male, age 75, both hemispheres
66.0
2734
Male, age 80, both hemispheres
61.1
2818
Female, age 79, both hemispheres
57.7
2819
Male, age 47, both hemispheres
56.4
Cervical spinal cord, central gray nTPM: 59.4
2194
Female, age 79, both hemispheres
67.0
2816
Male, age 47, midline
66.9
2048
Male, age 55, midline
57.0
1981
Female, age 72, midline
53.8
2565
Male, age 75, midline
52.4
Cervical spinal cord, dorsal horn nTPM: 57.1
2296
Male, age 66, both hemispheres
79.6
2721
Male, age 90, both hemispheres
54.8
2173
Female, age 72, unknown
54.4
2069
Male, age 47, both hemispheres
53.5
1877
Male, age 55, unknown
53.2
2297
Male, age 75, both hemispheres
46.8
Cervical spinal cord, ventral horn nTPM: 51.9
2820
Female, age 79, both hemispheres
67.9
2068
Male, age 55, unknown
54.3
2098
Female, age 72, unknown
52.2
2480
Male, age 75, both hemispheres
48.2
2809
Male, age 90, both hemispheres
47.4
2295
Male, age 66, both hemispheres
41.7
Dorsal funiculus (white matter) nTPM: 62.6
2810
Male, age 90, both hemispheres
67.5
2812
Male, age 66, both hemispheres
64.6
2817
Male, age 47, both hemispheres
62.0
2128
Male, age 75, both hemispheres
60.3
2064
Female, age 79, both hemispheres
58.7
Lateral funiculus (white matter) nTPM: 62.0
2192
Male, age 75, both hemispheres
68.5
2094
Female, age 79, both hemispheres
64.1
2099
Male, age 90, both hemispheres
63.5
2294
Male, age 66, both hemispheres
51.8
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
47.3
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 47.3
Samples: 204
Max nTPM: 86.6
Min nTPM: 23.5
Std nTPM: 10.3
Median nTPM: 47.2
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
86.6
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
75.6
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
70.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
68.5
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
67.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
67.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
67.1
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
66.3
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
66.1
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
65.4
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
65.3
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
64.6
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
64.2
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
63.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
62.4
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
61.3
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
60.8
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
60.6
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
60.3
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
60.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
59.5
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
59.4
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
59.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
59.2
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
59.1
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
58.8
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
58.7
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
58.5
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
58.5
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
58.1
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
57.9
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
57.8
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
57.6
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
57.5
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
57.4
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
57.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
57.4
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
57.3
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
57.1
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
56.5
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
56.2
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
55.9
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
55.8
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
55.8
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
55.7
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
55.5
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
55.4
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
55.4
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
55.0
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
54.7
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
54.3
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
53.9
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
53.5
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
53.1
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
52.5
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
52.5
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
52.5
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
52.3
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
52.3
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
52.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
52.0
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
51.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
51.8
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
51.7
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
51.6
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
51.6
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
51.4
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
51.3
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
51.2
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
51.0
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
50.9
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
50.8
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
50.7
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
50.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
50.4
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
50.3
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
49.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
49.8
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
49.7
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
49.7
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
49.2
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
49.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
49.2
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
49.0
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
48.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
48.9
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
48.9
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
48.7
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
48.6
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
48.4
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
48.4
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
48.3
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
48.2
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
48.2
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
48.2
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
48.1
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
47.9
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
47.8
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
47.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
47.6
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
47.5
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
47.3
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
47.0
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
47.0
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
46.6
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
46.4
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
46.3
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
46.2
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
46.2
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
46.2
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
46.1
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
45.6
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
45.5
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
45.5
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
45.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
45.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
45.2
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
45.1
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
44.6
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
44.4
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
44.4
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
44.4
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
44.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
44.3
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
44.2
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
44.2
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
44.2
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
44.2
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
43.9
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
43.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
43.7
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
43.4
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
43.1
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
42.9
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
42.9
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
42.8
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
42.7
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
42.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
42.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
42.4
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
42.3
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
42.1
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
42.0
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
41.7
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
41.6
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
41.5
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
41.4
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
41.0
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
40.8
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
40.6
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
40.4
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
40.3
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
40.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
40.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
40.0
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
39.8
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
39.6
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
39.5
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
39.5
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
39.1
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
38.9
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
38.6
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
38.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
38.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
38.2
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
38.1
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
37.9
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
37.8
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
37.7
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
37.5
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
37.0
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
36.4
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
36.4
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
36.1
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
36.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
36.1
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
35.8
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
35.7
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
35.6
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
35.0
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
35.0
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
34.8
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
34.5
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
34.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
33.5
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
33.4
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
33.3
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
33.3
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
33.0
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
31.9
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
31.5
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
31.1
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
31.0
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
30.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
29.8
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
29.7
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
29.7
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
28.6
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
27.2
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
26.8
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
26.8
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
26.0
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
25.1
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
23.5
Show allShow less
SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
25.6
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 25.6
Samples: 2
Max nTPM: 26.8
Min nTPM: 24.4
Sample A
26.8
Sample B
24.4
Ventral spinal cord nTPM: 24.1
Samples: 1
Max nTPM: 24.1
Min nTPM: 24.1
Sample A
24.1
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.7
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 23.3
Samples: 4
Max nTPM: 27.3
Min nTPM: 18.1
Sample A
Female
25.3
Sample B
Female
22.5
Sample C
Male
18.1
Sample D
Male
27.3
Ventral spinal cord nTPM: 27.7
Samples: 4
Max nTPM: 28.5
Min nTPM: 26.3
Sample A
Female
27.8
Sample B
Female
28.5
Sample C
Male
26.3
Sample D
Male
28.1
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.7
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 24.7
Samples: 4
Max nTPM: 26.2
Min nTPM: 23.1
Sample A
23.1
Sample B
26.2
Sample C
24.3
Sample D
25.1
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.1
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 18.1
Samples: 4
Max nTPM: 18.9
Min nTPM: 17.7
Sample A
17.8
Sample A
18.9
Sample A
17.7
Sample A
18.0
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
