A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.0
nTPM
Monaco:
49.8
nTPM
Schmiedel:
23.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.0
HPA sample
nTPM
NK-cell nTPM: 17.0
Samples: 6
Max nTPM: 41.5
Min nTPM: 6.3
P10809_1013
14.3
P10809_1033
12.6
P10809_1052
14.5
P10809_1071
6.3
P10809_1093
41.5
P10809_1103
12.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.8
Monaco sample
nTPM
NK-cell nTPM: 49.8
Samples: 4
Max nTPM: 60.3
Min nTPM: 40.6
RHH5316_R3683
44.2
RHH5224_R3596
40.6
RHH5253_R3625
60.3
RHH5282_R3654
54.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.7
Schmiedel sample id
TPM
NK-cell TPM: 23.7
Samples: 90
Max TPM: 33.5
Min TPM: 17.7
NK_1
33.5
NK_2
32.9
NK_3
31.1
NK_4
29.4
NK_5
28.9
NK_6
28.1
NK_7
28.0
NK_8
27.5
NK_9
27.5
NK_10
27.1
NK_11
27.1
NK_12
26.8
NK_13
26.6
NK_14
26.3
NK_15
26.3
NK_16
26.2
NK_17
26.2
NK_18
26.1
NK_19
25.9
NK_20
25.7
NK_21
25.7
NK_22
25.7
NK_23
25.2
NK_24
25.2
NK_25
25.1
NK_26
25.0
NK_27
25.0
NK_28
24.8
NK_29
24.7
NK_30
24.1
NK_31
24.1
NK_32
24.1
NK_33
24.0
NK_34
23.9
NK_35
23.9
NK_36
23.8
NK_37
23.8
NK_38
23.7
NK_39
23.7
NK_40
23.6
NK_41
23.6
NK_42
23.6
NK_43
23.4
NK_44
23.3
NK_45
23.3
NK_46
23.3
NK_47
23.2
NK_48
23.1
NK_49
23.1
NK_50
23.0
NK_51
23.0
NK_52
22.9
NK_53
22.8
NK_54
22.8
NK_55
22.7
NK_56
22.6
NK_57
22.5
NK_58
22.5
NK_59
22.4
NK_60
22.2
NK_61
22.2
NK_62
22.1
NK_63
22.1
NK_64
22.1
NK_65
21.9
NK_66
21.8
NK_67
21.7
NK_68
21.6
NK_69
21.6
NK_70
21.6
NK_71
21.5
NK_72
21.5
NK_73
21.5
NK_74
21.5
NK_75
21.4
NK_76
21.4
NK_77
21.3
NK_78
21.3
NK_79
21.1
NK_80
21.0
NK_81
21.0
NK_82
21.0
NK_83
20.2
NK_84
20.2
NK_85
20.1
NK_86
19.7
NK_87
19.5
NK_88
19.5
NK_89
17.9
NK_90
17.7
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