MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.6 nTPM
HPA Brain:20.6 nTPM
GTEx:8.6 nTPM
FANTOM5:52.6 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:18.6 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 20.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.8
2411 Female, age 72, unknown 20.6
1870 Female, age 42, unknown 20.2
2586 Male, age 75, left hemisphere 19.7
2219 Male, age 76, both hemispheres 18.5
2828 Female, age 72, unknown 18.1
1833 Male, age 53, unknown 16.6
1827 Male, age 72, unknown 16.3
1830 Male, age 51, unknown 15.2
2666 Male, age 74, left hemisphere 11.6
2019 Male, age 18, unknown 11.4
Dorsal raphe nucleus
nTPM: 18.5
2750 Male, age 76, both hemispheres 19.9
2016 Female, age 72, unknown 19.3
1828 Male, age 53, unknown 18.9
2047 Male, age 72, unknown 17.9
2298 Female, age 72, unknown 16.3
Inferior colliculus
nTPM: 14.7
1890 Male, age 53, unknown 17.2
2097 Female, age 72, unknown 15.6
1848 Female, age 42, unknown 14.8
2849 Male, age 72, unknown 11.1
Median raphe nucleus
nTPM: 18.9
2220 Male, age 76, midline 18.9
Periaquaductal grey, anterior
nTPM: 18.4
1947 Male, age 18, unknown 19.0
2502 Female, age 75, unknown 18.4
1795 Male, age 51, unknown 17.7
Periaquaductal grey, dorsal
nTPM: 15.4
2850 Male, age 76, both hemispheres 19.6
1831 Male, age 72, unknown 16.0
1840 Male, age 53, unknown 13.6
2464 Female, age 72, unknown 12.5
Periaquaductal grey, lateral
nTPM: 14.6
2053 Male, age 18, unknown 15.6
2140 Male, age 76, both hemispheres 14.1
2272 Male, age 74, both hemispheres 14.1
Pretectal area
nTPM: 14.8
2667 Female, age 75, unknown 19.3
2825 Male, age 18, unknown 18.1
1815 Male, age 53, unknown 16.7
2316 Male, age 76, right hemisphere 15.0
1816 Male, age 51, unknown 14.2
2407 Male, age 75, both hemispheres 13.7
2224 Female, age 72, unknown 13.6
1817 Female, age 42, unknown 13.5
2007 Male, age 72, unknown 13.2
2273 Male, age 74, both hemispheres 13.0
1944 Female, age 72, unknown 12.2
Red nucleus
nTPM: 18.4
1821 Female, age 72, unknown 26.5
1904 Male, age 53, unknown 20.4
2769 Male, age 72, unknown 20.1
2227 Male, age 72, unknown 19.3
2823 Male, age 76, right hemisphere 19.0
1865 Male, age 51, unknown 18.7
2588 Male, age 74, left hemisphere 18.5
2503 Female, age 72, unknown 17.3
1954 Female, age 42, unknown 16.4
2725 Female, age 75, unknown 16.1
2584 Male, age 75, left hemisphere 14.2
2785 Male, age 18, unknown 14.2
Substantia nigra
nTPM: 20.5
1916 Female, age 42, unknown 32.2
2699 Male, age 18, unknown 27.0
1851 Male, age 51, unknown 25.8
2241 Male, age 72, unknown 22.8
2665 Male, age 74, both hemispheres 20.3
2590 Female, age 75, unknown 17.2
1889 Female, age 72, unknown 17.0
1941 Male, age 53, unknown 16.0
2583 Male, age 75, right hemisphere 14.6
2409 Female, age 72, unknown 12.4
Superior colliculus
nTPM: 15.7
1895 Male, age 76, right hemisphere 17.9
1796 Male, age 53, unknown 16.6
2664 Male, age 75, both hemispheres 16.3
1995 Male, age 72, unknown 16.2
1913 Female, age 42, unknown 15.7
2668 Female, age 75, unknown 15.3
2261 Male, age 18, unknown 15.2
1839 Male, age 51, unknown 14.5
2587 Male, age 74, left hemisphere 14.5
2087 Female, age 72, unknown 14.3
Ventral tegmental area
nTPM: 20.6
1915 Female, age 42, unknown 23.7
2218 Male, age 76, both hemispheres 23.1
2410 Female, age 72, unknown 22.9
1942 Male, age 51, unknown 18.9
2223 Female, age 72, unknown 17.7
2021 Male, age 53, unknown 17.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.6
Samples: 183

Max nTPM: 17.5
Min nTPM: 2.3
Std nTPM: 2.4
Median nTPM: 8.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 17.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 15.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 14.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 14.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 14.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 13.8
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 13.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 13.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 12.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 12.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.6
FF:10158-103A5 76 years, female 52.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.8
Samples: 4

Max nTPM: 14.5
Min nTPM: 12.1
Sample A Female 12.6
Sample B Female 12.1
Sample C Male 14.5
Sample D Male 12.1
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 14.1
Min nTPM: 12.0
Sample A Female 13.4
Sample B Female 12.0
Sample C Male 13.0
Sample D Male 14.1
Periaqueductal gray
nTPM: 10.8
Samples: 3

Max nTPM: 11.5
Min nTPM: 10.1
Sample B Female 10.9
Sample C Male 11.5
Sample D Male 10.1
Superior colliculi
nTPM: 13.2
Samples: 4

Max nTPM: 13.8
Min nTPM: 12.6
Sample A Female 13.8
Sample B Female 13.8
Sample C Male 12.6
Sample D Male 12.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.6
Samples: 4

Max nTPM: 19.0
Min nTPM: 17.8
Sample A Male 18.7
Sample B Male 17.8
Sample C Female 19.0
Sample D Female 18.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
74819462 Antisense, RP_060315_02_F04, Mouse strain C57BL/6J (56 days, male) 1.5
69838113 Antisense, RP_050224_02_C12, Mouse strain C57BL/6J (56 days, male) 1.4

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