MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.2 nTPM
HPA Brain:41.2 nTPM
GTEx:27.2 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:43.3 nTPM
Mouse:21.5 nTPM
Allen mouse:3.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.2
2586 Male, age 75, left hemisphere 54.3
2219 Male, age 76, both hemispheres 41.7
2828 Female, age 72, unknown 39.3
2411 Female, age 72, unknown 37.1
2666 Male, age 74, left hemisphere 34.5
1827 Male, age 72, unknown 34.0
2019 Male, age 18, unknown 32.7
1833 Male, age 53, unknown 31.6
1870 Female, age 42, unknown 30.1
1830 Male, age 51, unknown 26.4
Dorsal raphe nucleus
nTPM: 39.1
2298 Female, age 72, unknown 45.6
2047 Male, age 72, unknown 43.1
1828 Male, age 53, unknown 39.0
2750 Male, age 76, both hemispheres 36.2
2016 Female, age 72, unknown 31.4
Inferior colliculus
nTPM: 30.8
1848 Female, age 42, unknown 32.7
1890 Male, age 53, unknown 31.3
2849 Male, age 72, unknown 30.2
2097 Female, age 72, unknown 29.2
Median raphe nucleus
nTPM: 40.4
2220 Male, age 76, midline 40.4
Periaquaductal grey, anterior
nTPM: 33.5
1795 Male, age 51, unknown 36.1
1947 Male, age 18, unknown 33.6
2502 Female, age 75, unknown 30.8
Periaquaductal grey, dorsal
nTPM: 27.0
1840 Male, age 53, unknown 31.6
2464 Female, age 72, unknown 29.4
1831 Male, age 72, unknown 26.1
2850 Male, age 76, both hemispheres 21.0
Periaquaductal grey, lateral
nTPM: 21.7
2053 Male, age 18, unknown 25.3
2272 Male, age 74, both hemispheres 21.8
2140 Male, age 76, both hemispheres 18.0
Pretectal area
nTPM: 33.6
1816 Male, age 51, unknown 42.7
1817 Female, age 42, unknown 42.3
2007 Male, age 72, unknown 41.4
1944 Female, age 72, unknown 39.1
2224 Female, age 72, unknown 36.3
2667 Female, age 75, unknown 35.7
1815 Male, age 53, unknown 32.8
2825 Male, age 18, unknown 31.6
2407 Male, age 75, both hemispheres 23.2
2273 Male, age 74, both hemispheres 22.8
2316 Male, age 76, right hemisphere 21.6
Red nucleus
nTPM: 31.8
2503 Female, age 72, unknown 38.6
2588 Male, age 74, left hemisphere 36.9
2725 Female, age 75, unknown 34.9
1821 Female, age 72, unknown 34.2
2769 Male, age 72, unknown 31.4
1954 Female, age 42, unknown 31.3
2785 Male, age 18, unknown 31.0
1904 Male, age 53, unknown 29.7
2227 Male, age 72, unknown 29.6
2584 Male, age 75, left hemisphere 29.6
1865 Male, age 51, unknown 28.3
2823 Male, age 76, right hemisphere 25.8
Substantia nigra
nTPM: 41.2
1916 Female, age 42, unknown 60.5
1851 Male, age 51, unknown 45.7
2665 Male, age 74, both hemispheres 45.4
1889 Female, age 72, unknown 41.9
1941 Male, age 53, unknown 40.5
2699 Male, age 18, unknown 40.0
2241 Male, age 72, unknown 38.9
2409 Female, age 72, unknown 36.2
2583 Male, age 75, right hemisphere 32.6
2590 Female, age 75, unknown 30.9
Superior colliculus
nTPM: 30.2
2087 Female, age 72, unknown 36.4
2664 Male, age 75, both hemispheres 35.3
2668 Female, age 75, unknown 35.3
1796 Male, age 53, unknown 34.2
1839 Male, age 51, unknown 29.4
2261 Male, age 18, unknown 29.3
2587 Male, age 74, left hemisphere 26.9
1913 Female, age 42, unknown 26.0
1995 Male, age 72, unknown 25.8
1895 Male, age 76, right hemisphere 23.2
Ventral tegmental area
nTPM: 37.4
1915 Female, age 42, unknown 44.6
2410 Female, age 72, unknown 44.0
1942 Male, age 51, unknown 35.5
2218 Male, age 76, both hemispheres 35.5
2223 Female, age 72, unknown 32.8
2021 Male, age 53, unknown 32.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.2
Samples: 183

Max nTPM: 67.9
Min nTPM: 9.8
Std nTPM: 9.9
Median nTPM: 26.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 67.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 58.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 55.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 54.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 54.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 51.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 49.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 48.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 48.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 44.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 43.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.5
FF:10158-103A5 76 years, female 24.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 43.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.5
Samples: 4

Max nTPM: 48.0
Min nTPM: 35.3
Sample A Female 46.0
Sample B Female 35.3
Sample C Male 48.0
Sample D Male 36.5
Midbrain
nTPM: 43.3
Samples: 4

Max nTPM: 53.3
Min nTPM: 33.2
Sample A Female 53.3
Sample B Female 33.2
Sample C Male 51.9
Sample D Male 34.8
Periaqueductal gray
nTPM: 29.2
Samples: 3

Max nTPM: 34.2
Min nTPM: 25.3
Sample B Female 28.2
Sample C Male 34.2
Sample D Male 25.3
Superior colliculi
nTPM: 43.0
Samples: 4

Max nTPM: 44.5
Min nTPM: 40.6
Sample A Female 43.1
Sample B Female 44.5
Sample C Male 43.7
Sample D Male 40.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.6
Samples: 4

Max nTPM: 22.7
Min nTPM: 20.2
Sample A Male 21.6
Sample B Male 20.2
Sample C Female 21.7
Sample D Female 22.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
2119 Antisense, RP_040407_02_E07, Mouse strain C57BL/6J (56 days, male) 3.2
2120 Antisense, RP_040407_02_E07, Mouse strain C57BL/6J (56 days, male) 0.6

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